Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq24 123 4e-23 seq14 123 4e-23 seq31 113 7e-20 >seq24 Length=140537 Score = 123 bits (136), Expect = 4e-23 Identities = 302/451 (67%), Gaps = 40/451 (9%) Strand=Plus/Plus Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| || ||||||||||| ||||||||||| | ||| |||| | | || ||||| || Sbjct 114 TTCGCTGCGGTAGAGGGCATATTCTTTTCGGGGTCGTTCTGCGCGC-TGTTCTGGCTGAA 172 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| || |||||||| ||||| ||| |||||| | || || || |||||||| Sbjct 173 GAAGCGCGGGCTGATGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGG 232 Query 125555 CCTACACTGTGACTTTGC---CAT--TCTACTGTTTCGCA--------ACTATCTGCGTC 125601 ||| ||| |||||||| | | ||||| | ||||| || | |||| | Sbjct 233 CCTGCACACGGACTTTGCGTGCCTGCTCTAC-GACTCGCACATCAAGCACAAGCTGC--C 289 Query 125602 CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAG 125661 ||| | || ||| | || ||||| || ||||| |||| || | Sbjct 290 CCGTGAGC-------GCGTTCTGGAGATCATC------GT---GGATGCAGTGAACATTG 333 Query 125662 AACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721 | | ||||| | ||| | || || || | |||| ||||||||| | || | Sbjct 334 AGCGCGAGTTCATCTGCGACGCGCTGCCTGTGCGGCTGATCGGCATGAACGCTGAACTGA 393 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---A 125778 ||| ||||||| |||||||||||||| || || || | || | | || | | | Sbjct 394 TGTCGCAGTACATCGAGTTTGTGGCAGACCGGCTGCT---TGTGTCGCTGGGGCTCGAGA 450 Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 || ||||||| | | || || || |||||| | || || || | || |||| Sbjct 451 AGCACTACAACGTGGCGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAAGGCAAGA 510 Query 125839 CCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | ||||| ||||||||||||||| | ||||| Sbjct 511 CGAACTTCTTCGAGAAGAAGGTCGGTGAGTA 541 >seq14 Length=160581 Score = 123 bits (136), Expect = 4e-23 Identities = 350/523 (67%), Gaps = 16/523 (3%) Strand=Plus/Plus Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || | || ||||||| ||| || Sbjct 142963 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGAGAA--GTTAAAC- 143019 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | | || || ||||| || ||| || ||| Sbjct 143020 GACGGCGAGCGGCACTTCATCAAGCACGTCCTTGCTTTTTTTGCAGGGAGCGACGGCATC 143079 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 |||| ||| || || | || ||| || ||| | || |||| | || || Sbjct 143080 GTCATCGAGAACCTCGCGCAGCGCTTCATGACCGACGTGAAGGTGCCGGAGGCG-CGCGC 143138 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| | ||||| |||||| | |||||||| | |||||| ||| | Sbjct 143139 CTTCTACGGCTTCCAGTTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCT 143198 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 ||||| |||||| | || | || | | || | ||| | |||||||| | ||| Sbjct 143199 TGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCAATCCAGACGA 143257 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT-GACGA-CAAGTC 125410 | |||| | | || ||||| | |||| | || ||||||| | || | || | Sbjct 143258 TCCCGTGCGTTCAGAAGAAGGCGGAGTGGGCTGTGCGTTGGATCGGGAGCCGCGCGAG-C 143316 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTA 125469 ||| || | ||| | | |||||||| || |||||||| ||||| || |||| Sbjct 143317 TTCCAG----GAGCGGCTGATCGGCTTCGCCGCGGTTGAGGGCATATTCTTCTCCGGGTC 143372 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| |||| | | || ||||| ||||||||||| || |||||||| ||||| ||| | Sbjct 143373 GTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGGCTGACCTTCAGCA 143431 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| | || || || ||||||||||| ||| ||||| || Sbjct 143432 ACGAGCTCATCTCGCGTGACGAGGGCCTGCACACGGACTTCGC 143474 >seq31 Length=128647 Score = 113 bits (124), Expect = 7e-20 Identities = 304/456 (67%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTAT---CGAG 96953 || ||| | ||||| ||| |||| || |||||||| ||| | |||| ||| | | | Sbjct 107561 GGTGCTTTCGCCGTGTACCTGGAGCCGTGGCACGCCGACATCTTTGGTTTTCTGCTCCTG 107620 Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013 | |||||| | | ||| || || || || | || |||| || || || ||| Sbjct 107621 AAGCGCAACACC---GGCAAGGACGACCAGCGTGCGCGTGATCTGTTCTACGCCCTGTGG 107677 Query 97014 GTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCC 97073 || || || ||||||||||||| || || || || | |||| || ||| ||| Sbjct 107678 GTCCCCGACCTGTTCATGAAGCGTGTGAAGAGCGAAGGGAAGTGGACGCTGATGGACCCG 107737 Query 97074 GACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG-GCCAAGTACACGGC 97132 || | | || || || || |||| ||||| ||||| ||| ||| | || | Sbjct 107738 AACGCCTGTCCGGGCTTGAGTGACTGCTACGGCGAGGAGTTCGAGCGCCTA-TATGAGCG 107796 Query 97133 CTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGATGCACGAGAACTGTGGAAGGCCA 97191 ||||||| |||||||| |||| |||| | || | || | || ||||| || | Sbjct 107797 CTACGAGGCGGAGGGCCGTGGCGTGCAGACTATTC-AGGCGCAGGAGGTGTGGTTCGCTA 107855 Query 97192 TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATC 97251 || | | | ||| | ||||| || |||| ||| || |||||||| | ||| | | Sbjct 107856 TCCTCGAGTCGCAGATTGAGACGGGCGTGCCGTTCATCCTGTACAAGGACGC-GTGCAAC 107914 Query 97252 G-CAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATT 97310 | ||| ||||| || | |||||||||||| |||| || ||||| ||||| || Sbjct 107915 GGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGTGCTCGAACCTGTGTACGGAGATA 107974 Query 97311 GTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || |||||| |||| ||||| ||||| || || ||| Sbjct 107975 GTTGAGTACACCTCGCCGGAGGAGACCGCCGTGTGC 108010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047935900160