Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq14 123 5e-23 seq24 122 2e-22 seq208 114 3e-20 >seq14 Length=160581 Score = 123 bits (136), Expect = 5e-23 Identities = 493/761 (65%), Gaps = 30/761 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | ||| ||||| | ||||||||||||||| || | || Sbjct 143747 TCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 143688 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| ||||||||||| | Sbjct 143687 ACGTTGTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCCGCCACAAACTCGATG 143628 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| | || || ||| | || || |||||| Sbjct 143627 TACTGCGACATCAGGTCCGCGTTCATGCCGACCAACCGCACAGGCAGCGCGTCGCAGATG 143568 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || || || || || ||| | | || || || | | | | |||| Sbjct 143567 AACTCGCGCTCAATGTTCACCGCGTCCACGATGATCTCCAGAACGCGCTCACGGGGCAGC 143508 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || ||| |||| || ||| || | || |||||| ||||||| Sbjct 143507 TTGTGCTTGATGTGCGAGTCGTAGAGGAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 143450 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| ||||||| | ||| || ||||||| ||| || ||| | |||| Sbjct 143449 CACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCGCTTCTTCAGCC 143390 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG-CAACA 251976 |||| | ||||| || || || ||||| | | ||||| || | | | | | | | Sbjct 143389 AGAACAGCGCGCAGAACGACCCGGAGAAGAATATGCCCTCAAC-CGCGGCGAAGCCGATC 143331 Query 251977 AGGCGCTC-----AGCAAACGACTTGTCCTGCGACAA-GAACTTCTGTGCCCATGCTGCC 252030 || ||||| ||| || | ||| | ||| | || ||||| | ||| Sbjct 143330 AGCCGCTCCTGGAAGCTCGCG-CGGCTCCCGATCCAACGCAC-----AGCCCACTCCGCC 143277 Query 252031 TTCTTTCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCA 252087 ||||| ||| ||||| || | |||||| | || || || ||| |||| Sbjct 143276 TTCTTCTGAACGCACGGGATCGTCTGGATTGCGTGCAGCAGCCGCAGCTTCTCCTCG--- 143220 Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 |||| |||| || |||||||| | |||||| ||||||| |||||| || | Sbjct 143219 CTGTCCGTGATGTACGTGTCAAGCAGCACCGAGTACGTCTCCGAGTGGATGTTCTCCATC 143160 Query 252148 AACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTG 252207 | || |||| | | ||||| ||||| || | | || || || ||| Sbjct 143159 ATCAACTGGAAGCCGTAGAAGGCGCGCGCCTCCGGCACCTTCACGTCGGTCATGAAGCGC 143100 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTG 252267 | || | |||||| || || ||||| ||||| |||||||| || |||| | | |||| Sbjct 143099 TGCGCGAGGTTCTCGATGACGATGCCGTCGCTCCCTGCAAAAAAAGCAAGGACGTGCTTG 143040 Query 252268 ATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||||||| ||||| ||||||| | ||| || |||||| Sbjct 143039 ATGAAGTGCCGCTCGCCGTCGTTTAACTTCTC---CCAGTC 143002 >seq24 Length=140537 Score = 122 bits (134), Expect = 2e-22 Identities = 259/386 (67%), Gaps = 3/386 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | ||| ||||| | ||||||||||||||| || | | Sbjct 523 TCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGCC 464 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||||||||||||||| | Sbjct 463 ACGTTGTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCTGCCACAAACTCGATG 404 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||||||| ||||||||| |||| || ||| | || || |||||| Sbjct 403 TACTGCGACATCAGTTCAGCGTTCATGCCGATCAGCCGCACAGGCAGCGCGTCGCAGATG 344 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || || || ||||| ||| | | || || || | | | | |||| Sbjct 343 AACTCGCGCTCAATGTTCACTGCATCCACGATGATCTCCAGAACGCGCTCACGGGGCAGC 284 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACCCTCGTCG 251859 |||| || | | |||| |||| || |||| | |||||| |||||||| Sbjct 283 TTGTGCTTGATGTGCGAGTCGTAGAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCA 224 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||| | ||| || ||||||| ||| || ||| | |||||| Sbjct 223 CGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCGCTTCTTCAGCCAG 164 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAA 251945 || | ||||| || || || || || Sbjct 163 AACAGCGCGCAGAACGACCCCGAAAA 138 >seq208 Length=48303 Score = 114 bits (126), Expect = 3e-20 Identities = 219/318 (69%), Gaps = 20/318 (6%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||||||||| ||||| |||| || |||||| || Sbjct 26827 GACTTTGTGGACAAGGAGCTCATTCTCTTCTCCATCGCGGACTGC----GAGCGTAGCAT 26772 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||| | |||||| ||||||| ||||| ||||||||||| || || || Sbjct 26771 TCCGAGCGCTATTGATGGCTTCAAGCCGGGACAGCGCAAGATCCTCTTCTCCTGCTTTAA 26712 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||||| | | |||||||| | ||| | | ||||| || || || || Sbjct 26711 GCGTAACCTCATCAACTCGATTAAGGTGGTGCAGCTGGCCGGTTACGTCTCGGAGCACTC 26652 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | ||||| || |||||||| | | ||||| | || || || ||||| ||||| Sbjct 26651 CGCTTACCACCATGGTGAGCAGTCGCTTGTGCAG---ACAATCGTGGGAATGGCGCAGGA 26595 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || || ||||| |||||| | || |||||||| || |||||||||| ||| | || Sbjct 26594 CTTCGTTGGCAGCAACAAC--GTAC-CGCTGCTCCGCAAGGACGGTCAGTTCGGTACCCG 26538 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||| || ||||| Sbjct 26537 CCTACAGGGCGGCAAGGA 26520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820786302656