Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14 163 5e-35 seq31 156 8e-33 seq24 149 1e-30 seq387 87.8 3e-12 seq354 87.8 3e-12 seq109 87.8 3e-12 >seq14 Length=160581 Score = 163 bits (180), Expect = 5e-35 Identities = 551/844 (65%), Gaps = 38/844 (5%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| || || |||||||| ||||| ||| |||||||||||| | |||||| | Sbjct 143785 TCATCACACCAGCCTTCTGATACTCACCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTT 143726 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || | | || | ||||| | | Sbjct 143725 GCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTCTCGAGCC 143666 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | ||||| ||||| |||||||||||||| ||||||||||| || Sbjct 143665 CCAGCGACACAAGCAGCCGGTCCGCCACAAACTCGATGTACTGCGACATCAGGTCCGCGT 143606 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| | || || || | |||||||| ||||| || || || |||| Sbjct 143605 TCATGCCGACCAACCGCACAGGCAGCGCGTCGCAGATGAACTCGCGCTCAATGTTCACCG 143546 Query 10174 CTTCCTCGACGATGCTCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAGCTTCGAAT-- 10230 | ||| ||| ||| ||| | | || ||| ||| |||||||| || || | ||| | Sbjct 143545 CGTCCACGATGAT-CTCCAGAACGCGCTCACGGGGCAGCTTGTGCTTGATGTGCGAGTCG 143487 Query 10231 -ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 | ||||| | || | | ||| ||||||||||| || ||||| ||||||| Sbjct 143486 TAGAGGAGGCACGCGAAGTCCGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGCTG 143427 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCG 10349 || ||| |||||||| ||||| || || ||||||||| | ||||||||||||||| Sbjct 143426 AAGGTCAGCCCGGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCG 143367 Query 10350 GAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAG---GAGCGG 10406 ||||| | | ||||| || | || ||| || ||||| |||| | |||| Sbjct 143366 GAGAAGAATATGCCCTCAACCGCGGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCGCGG 143307 Query 10407 TCGCGCGA---AAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTC 10463 | | ||| || | | |||||| | |||||||| ||| ||||||||| Sbjct 143306 -CTCCCGATCCAACG-----CACAGCCCACTCCGCCTTCTTCTGAACGCACGGGATCGTC 143253 Query 10464 TCGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCA 10517 | ||| || | | || ||||| | |||| | |||| || | ||| Sbjct 143252 TGGATTGCGTGCAGCAGCCGCAGCTTCT---CCTCGCT---GTCCGTGATGTACGTGTCA 143199 Query 10518 AGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAAC 10577 || |||| ||||| ||| ||||| | |||| | | |||| | ||||||| Sbjct 143198 AGCAGCACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAACTGGAAGCCGTAGAAG 143139 Query 10578 ATACGTGCCGAGGGGTCCGTGACTTCCTCGGCA--AAGTTGTTGTTC-AGGTTCTCCATC 10634 || ||| || || | || || | || ||| | || | |||||||| || Sbjct 143138 GCGCGCGCCTCCGGCACCTTCACGTC--GGTCATGAAG-CGCTGCGCGAGGTTCTCGATG 143082 Query 10635 ACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCA 10694 || ||||| ||||| |||||||| || | |||| ||||||||||||||| ||||| | Sbjct 143081 ACGATGCCGTCGCTCCCTGCAAAAAAAGCAAGGACGTGCTTGATGAAGTGCCGCTCGCCG 143022 Query 10695 TCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTC 10754 ||||| | || || |||||| || || | | || | || |||||||| ||| Sbjct 143021 TCGTTTAACTTCTC---CCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTC 142965 Query 10755 CAGA 10758 |||| Sbjct 142964 CAGA 142961 >seq31 Length=128647 Score = 156 bits (172), Expect = 8e-33 Identities = 397/598 (66%), Gaps = 7/598 (1%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| || || || |||| || ||||| || || ||||| | ||| || || || | Sbjct 108009 CACACGGCGGTCTCCTCCGGCGAGGTGTACTCAACTATCTCCGTACACAGGTTCGAGCAC 107950 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 ||||||||||| || ||| | ||| |||| ||||| |||||||| || | Sbjct 107949 TTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCCGTTGCACGC-GTCCTTGTACAGGAT 107891 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | |||| ||||||||| ||||||| || || || ||| || || |||| | Sbjct 107890 GAACGGCACGCCCGTCTCAATCTGCGACTCGAGGATAGCGAACCACACCTCCTGCGCCT- 107832 Query 31880 GACGACTTTCTTCGC-ACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || | | | ||| ||| ||||| | ||||||||| ||| ||| |||| |||||| Sbjct 107831 GAATAGTCTGCACGCCACGGCCCTCCGCCTCGTAGCGCTCATATAGGCGCTCGAACTCCT 107772 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACAT 31998 ||| || || | | || ||||| | || ||||| | |||| ||| | | Sbjct 107771 CGCCGTAGCAGTCACTCAAGCCCGGACAGGCGTTCGGGTCCATCAGCGTCCACTTCCCTT 107712 Query 31999 CGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGG 32058 || || || |||||||||||||||||| | ||||| ||||| ||||||| | | Sbjct 107711 CGCTCTTCACACGCTTCATGAACAGGTCGGGGACCCACAGGGCGTAGAACAGATCACGCG 107652 Query 32059 CGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGGT 32118 | || ||| |||| || ||| || || ||||| || | | |||||||| || Sbjct 107651 CACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGGAGCAGAAAACCAAAGATGTCGGCGT 107592 Query 32119 GGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCGT 32175 | ||||| |||||||||||||||| |||||||| | ||| ||||||| ||| Sbjct 107591 GCCACGGCTCCAGGTACACGGCGAAAGCACCCTTGCGCTTACCACCACCCTGGTCCACGT 107532 Query 32176 ATGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCATTGG 32235 | | || ||| | |||| |||||| ||||| | || | ||| ||| || | Sbjct 107531 AGCGGGCGGTGTTGTTGAACACACGCAGCATCGGTACCAATCCGTTCGACGTGCCGTTCG 107472 Query 32236 TCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCGCC 32293 | || || | | ||| |||| || | | || ||||||||| |||||||| Sbjct 107471 TGCCGGCAATGTAGCTTCCAGCAGCGCGGATATTGTGCACGTGCAGGCCAATGCCGCC 107414 >seq24 Length=140537 Score = 149 bits (164), Expect = 1e-30 Identities = 292/426 (69%), Gaps = 7/426 (2%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||| ||||| ||| |||||||||||| | |||||| | Sbjct 561 TCATCACGCCAGCCTTCTGATACTCACCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTT 502 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || | | | || | ||||| | | Sbjct 501 GCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGCCACGTTGTAGTGCTTCTCGAGCC 442 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | ||||| ||||| |||||||||||||| |||||| || | || Sbjct 441 CCAGCGACACAAGCAGCCGGTCTGCCACAAACTCGATGTACTGCGACATCAGTTCAGCGT 382 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||| |||| || ||| || | |||||||| ||||| || || || || Sbjct 381 TCATGCCGATCA-GCCGCACAGGCAGCGCGTCGCAGATGAACTCGCGCTCAATGTTCACT 323 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || ||| ||| ||| ||| | | || ||| ||| |||||||| || || | ||| | Sbjct 322 GCATCCACGATGAT-CTCCAGAACGCGCTCACGGGGCAGCTTGTGCTTGATGTGCGAGTC 264 Query 10232 CAGGAGCTCTC---CAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 |||| | |||| | | ||| ||||||||||| || ||||| ||||||| Sbjct 263 GTAGAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGCT 204 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||| |||||||| ||||| || || ||||||||| | |||||||||||||| Sbjct 203 GAAGGTCAGCCCGGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCC 144 Query 10349 GGAGAA 10354 || || Sbjct 143 CGAAAA 138 >seq387 Length=18581 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 7215 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 7272 >seq354 Length=22435 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 8498 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 8441 >seq109 Length=75963 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 20847 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 20790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921608391339520