Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq31 329 6e-85 seq14 298 1e-75 seq24 221 2e-52 >seq31 Length=128647 Score = 329 bits (364), Expect = 6e-85 Identities = 1138/1754 (65%), Gaps = 61/1754 (3%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| |||||| || | || | || ||||| || | ||||||||||| ||||||| Sbjct 108944 CCACCGTGAACTTGATCGCATCGGCAGCCGCCTTCGTGCGCAGGTAGTACACACCGGTCT 108885 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 |||| |||| ||||| || || |||| | ||| | || || ||| | | Sbjct 108884 TGAGGCCACACTCCCAGGTGTAGAAAAGCATCGACGTGATCTGGC-CA----GAGGT--G 108832 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 || || || ||| || ||||| || ||||| ||||| | | | | | || | Sbjct 108831 GG--GTTCTG---CAGGAACAGGTTCAGCGACTGCGATTGGTCAATGTACTGACCGCGGT 108777 Query 243915 CTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 | ||||||| ||| || | ||||| ||||| || | || ||||| || Sbjct 108776 CGCGGGCCATGTCGATCAGCTTGCGCTGAGGGATCTCCCACACGGTGCGGTAGAGCTCCT 108717 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 | |||| | ||||| || ||||| | | || || || || || | | Sbjct 108716 TAAGGTCTTGGGGGATGCCGTCGATAGACAAGATAGACCCGTTTAGGGTAATAATTTCAT 108657 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA---GCGCCTCGACCAGGTGCCTGT 244091 ||||||| | ||||||||||| || ||||| | | || || || | | ||| Sbjct 108656 TGCGCATCGTCTCGTTCCACAGTCC---GCGCTTGATGAGGTCCATCACGAGATACTTGT 108600 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | |||||| | ||||| || |||||| |||||| ||||| |||| ||| |||| Sbjct 108599 TGACCACCGGGAACTCGCCGCTCAGCACACGGCGCACGTAGATGTTGGACGTGAAGGGCT 108540 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| || ||| ||||||| || ||||||| ||| ||| |||||||| || | || || Sbjct 108539 CGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCTGTCGGCATCGGGGCCAGCA 108480 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAGTCCC 244268 | || ||| | || ||| |||| || | || |||| || |||||||| Sbjct 108479 GAAGGGAGTTGCGCATACCGG---TCTGCATCACCTTCTCCTTGAGGCTGTCCCAGTCCC 108423 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 | ||| | | | ||| | ||||||||| |||||||| | |||| || Sbjct 108422 AGCGGCCACTG---TTCGGGCGGGGGTTCTTCCACATGTCGAACTGCAGAATGCCCTGGC 108366 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 || | |||||||||| | ||||| ||| | || || || |||| || | || | Sbjct 108365 TGGCCGGGCTGCCCTTGAAGGTCTCGTACGCGCCCTCCTCCTTCGCCATCTCCATAGATG 108306 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTT 244446 | || | ||||| ||||||| ||||| |||||| | |||| ||| | |||| Sbjct 108305 CC-TCCACCGCGGCAAAGTAGATCGTCTCAAAGATCTCCGCATTCACC-CGCTGCGCCTC 108248 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | ||| || || | | || || ||||| |||| ||||| |||||||| |||| Sbjct 108247 GGCGCTCACAAAAGGCAGACGCAGCAGAATGAACGCGTCTGCCAGGCCCTGCACACCGAG 108188 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 ||| ||||| | || ||| ||||| ||| | || |||||||| |||||| Sbjct 108187 GCCAATGGGGCGGTTGCGCATGTTGCTGCGAAGCGCCGTCTCAACGGGGTAGTAGTTGCG 108128 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCG-GACGACGTCGGCCAGCAGCTG 244623 ||||||||| ||| |||||||| |||||| | || ||| || | |||| || Sbjct 108127 GTCGATCACACGGTTCAGGTTGCGTGTGATCTGCTTCGTGACAGTGTAGAGCAGCTTGTG 108068 Query 244624 AAAG-TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 | | || || | | | ||||| ||| | || | | | || |||| Sbjct 108067 ATCGATCTCACGCTTCG----CCTCGTCGACG-----------AAGCGGGGT-AGCGCGA 108024 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 | ||| |||||||| ||||| |||||||| |||||||| || ||||| || | Sbjct 108023 TGGAGGCAAGGTTGCACACGGCGGTCTCCTCCGGCGAGGTGTACTCAACTATCTCCGTAC 107964 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | ||||| ||||||||||||||| |||| || || || |||||| ||||||| |||| Sbjct 107963 ACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCCGTTGCACGCGT 107904 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| || ||||| ||| | || ||||| | ||| | |||||| | ||| | Sbjct 107903 CCTTGTACAGGATGAACGGCACGCCCGTCTCAATCTGCGACTCGAGGATAGCGAACCACA 107844 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCC-TTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 ||| |||| | || |||| ||| |||||| ||||||||||| || ||| Sbjct 107843 CCTCCTGCGCCTGAATAGT-CTGCACGCCACGGCCCTCCGCCTCGTAGCGCTCATATAGG 107785 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 ||||||||| ||| || || | ||| || || | |||| ||| || Sbjct 107784 CGCTCGAACTCCTCGCCGTAGCAGTCACTCAAGCCCGGACAGGCGTTCGGGTCCATCAGC 107725 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||||| || || ||| || | || |||||| |||||||||| ||| ||||| | | Sbjct 107724 GTCCACTTCCCTTCGCTCTTCACACGCTTCATGAACAGGTCGGGGACCCACAGGGCGTAG 107665 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 || || || | | | ||| |||||| ||| ||||| | |||| || ||| || Sbjct 107664 AACAGATCACGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGGAGCAGAAAACCA 107605 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 |||| |||| ||||||| ||||||| ||| || |||| || || ||||| || Sbjct 107604 AAGATGTCGGCGTGCCACGGCTCCAGGTACACGGCGAAAGCACCCTTGCGCTTACCACCA 107545 Query 245162 CCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 |||||||||| | | || ||| |||||| | ||||| | || || | || Sbjct 107544 CCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGAACACACGCAGCATCGGTACCAATCC 107489 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA 245277 ||| || |||||| ||||| |||||| || | | || ||| | | Sbjct 107488 GTTCGACGTGCCGTTCGTGCCGGCAATGTAGCTTCCAGCAGCGCGGATATTGTGCACGTG 107429 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || ||| | ||||| || ||| ||||| ||| || ||| | |||||| || Sbjct 107428 CAGGCCAATGCCGCCCGCCGCTTTGCTGATGACGGCACACTCCTTCAGGGTGTCGTAAAT 107369 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 ||| || |||||||| ||||||| | || ||||| ||| || ||| ||||| || Sbjct 107368 GCCGTCGATGCTGTCGTCCTTCATGGCCACCAAGAAGCACGAGCTCATCTGCGGCTTCGG 107309 Query 245398 GCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCC 245457 ||| | |||||| || || || ||||||| || ||| | | |||| | || | Sbjct 107308 CGTGCCGGCGTTGAAGAGGGTTGGCGTGGCGTGCGTGAAGAATCCCTTCGACATCAATTC 107249 Query 245458 GTACGTCTGGAGCA 245471 |||||||| | ||| Sbjct 107248 GTACGTCTCGCGCA 107235 >seq14 Length=160581 Score = 298 bits (330), Expect = 1e-75 Identities = 599/874 (69%), Gaps = 27/874 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 ||||| |||| || |||||| || ||||||| || | || || || |||||| Sbjct 142911 GATCGTATACCACGATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCT 142970 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACG 42399 |||||||| ||||||| ||| |||| | | ||||||| | | | | | || || Sbjct 142971 GGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGAGAAGTTAAACGACGGCGAGCG 143030 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | ||| |||| || | || || || || || | |||||||| |||| | Sbjct 143031 GCAC----TTCATCAAGCACGTCCTTGCTTTTTTTGCAGGGAGCGACGGCATCGTCATCG 143086 Query 42460 AGAACCTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTAC 42518 ||||||| || || | | ||||||| || ||| || ||||||||| ||||||| Sbjct 143087 AGAACCTCGCGCAGC-GCTTCATGACCGACGTGAAGGTGCCGGAGGCGCGCGCCTTCTAC 143145 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACG 42578 ||||||||| | || |||||| | ||||| ||| |||| | ||||| ||||| Sbjct 143146 GGCTTCCAGTTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTTGACACG 143205 Query 42579 TACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC 42638 |||||| ||| || ||| ||||| | | || || ||||||| || ||| Sbjct 143206 TACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCAATCCAGACGATCCCGTGC 143265 Query 42639 ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGC 42698 | ||||||||||||| ||||| | ||||||| ||| ||| ||| | ||| Sbjct 143266 GTTCAGAAGAAGGCGGAGTGGGCTGTGCGTTGGATCGGGAG--CCG-CGCGAGCTTCCAG 143322 Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| ||||| | | ||| |||| || |||||||| |||||||| || | ||| | | Sbjct 143323 GAGCGGCTGATCGGCTTCGCCGCGGTTGAGGGCATATTCTTCTCCGGGTCGTTCTGCGCG 143382 Query 42759 ATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | |||||||| ||| || | | ||||||||| || |||||| ||||| |||||| Sbjct 143383 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGGCTGACCTTCAGCAACGAGCTCATC 143442 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC---TCGAGCCACCTC 42875 | |||||||| ||||| | |||||| || |||||||| | | ||| ||| || Sbjct 143443 TCGCGTGACGAGGGCCTGCACACGGACTTCGCGTGCCTCCTCTACGACTCG---CACATC 143499 Query 42876 AGGCACAAGC--CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | |||||||| || || ||||| || | || |||||| ||| || ||| | || | Sbjct 143500 AAGCACAAGCTGCCCCGT--GAGCGCGTTCTGGAGATCATCGTGGACGCGGTGAACATTG 143557 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 || |||||| || | ||||||| ||| |||||||||||||| ||||| | Sbjct 143558 AGCGCGAGTTCATCTGCGACGCGCTGCCTGTGCGGTTGGTCGGCATGAACGCGGACCTGA 143617 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCTC-AGCCG 43051 ||| |||||||| ||| || || |||| || | |||| | | |||| ||| || | Sbjct 143618 TGTCGCAGTACATCGAGTTTGTGGCGGACCGGCTGCTTGTGTC-GCTGGGGCTCGAGAAG 143676 Query 43052 CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 | ||||||| | || || |||||||| ||||||| |||||| || | |||||||| Sbjct 143677 -CACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAAGGCAAGAC 143735 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||||||| |||| || || ||| Sbjct 143736 GAACTTCTTCGAGAAGAAGGTCGGTGAGTATCAG 143769 >seq24 Length=140537 Score = 221 bits (244), Expect = 2e-52 Identities = 382/546 (70%), Gaps = 17/546 (3%) Strand=Plus/Plus Query 42607 GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 ||||| | | || || ||||||| || |||||| ||||||||||||| ||||| | Sbjct 10 GGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTAC 69 Query 42667 ACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||||||| || || ||| | ||| ||| ||||| | | ||| | || || | Sbjct 70 GTTGGATCGGCAG---CGGCGCTAGCTTCCAGGAGCGGCTGATCGGCTTCGCTGCGGTAG 126 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGA 42786 ||||||| ||||| ||||| | ||| | | | |||||||| ||| || | | || Sbjct 127 AGGGCATATTCTTTTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGA 186 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 ||||||| || |||||| ||||| |||||| | |||||||| ||||| | ||||| Sbjct 187 TGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACGGACT 246 Query 42847 TTGCCTGCCTCCTGTTC---TCGAGCCACCTCAGGCACAAGC--CCTCGAAGGAGCGGGT 42901 |||| ||||| || | | ||| ||| ||| |||||||| || || ||||| || Sbjct 247 TTGCGTGCCTGCTCTACGACTCG---CACATCAAGCACAAGCTGCCCCGT--GAGCGCGT 301 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | || |||||| ||| || ||| | || ||| |||||| || | ||||||| Sbjct 302 TCTGGAGATCATCGTGGATGCAGTGAACATTGAGCGCGAGTTCATCTGCGACGCGCTGCC 361 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 ||| ||| ||||||||||| || || |||| |||||||| ||| || || || Sbjct 362 TGTGCGGCTGATCGGCATGAACGCTGAACTGATGTCGCAGTACATCGAGTTTGTGGCAGA 421 Query 43022 CCATCT-CCTGTGCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 || || | |||| | | |||| ||| || | | ||||||| | || || |||||| Sbjct 422 CCGGCTGCTTGTGTC-GCTGGGGCTCGAGAAG-CACTACAACGTGGCGCAGCCGTTCGAC 479 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || ||||||| |||||| || | |||||||| ||||| ||||||||| |||| || Sbjct 480 TTCATGGAGATGATCTCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGTGAG 539 Query 43140 TACCAG 43145 || ||| Sbjct 540 TATCAG 545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324846044160