Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq31 286 3e-72 seq14 167 2e-36 seq24 147 2e-30 >seq31 Length=128647 Score = 286 bits (316), Expect = 3e-72 Identities = 974/1483 (66%), Gaps = 61/1483 (4%) Strand=Plus/Minus Query 153003 TTAATGAGGTC-ATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCG 153061 || |||||||| ||| | | |||| ||||||||| | |||||||| || ||| || Sbjct 108627 TTGATGAGGTCCATC-ACGAGATACTTGTTGACCACCGGGAACTCGCCGCTCAGCACACG 108569 Query 153062 TCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGC 153121 | || || | ||| ||||| || || ||| | ||||| ||||| || || || | Sbjct 108568 GCGCACGTAGATGTTGGACGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGA 108509 Query 153122 CGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAA 153180 |||| || |||||||| |||| || | || || |||| ||| | || | Sbjct 108508 GGTGGACGCTGTCGGCATCGGGGCCAGCAGAAGGGAGTTGCGCATACCGGTCTGCATCAC 108449 Query 153181 TGTCGTCCTTCAACGCCTG--CCAATCCCACAGCGCCGACGGT---GTCGCG-----TTC 153230 || ||||| | | ||| ||| ||||| ||| | || || | || | ||| Sbjct 108448 CTTC-TCCTTGA--GGCTGTCCCAGTCCCA--GCGGCCACTGTTCGGGCGGGGGTTCTTC 108394 Query 153231 CACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTG 153290 ||||||||| |||| | | || | ||||| || ||||| || || ||| | Sbjct 108393 CACATGTCGAACTGCAGAATGCCCTGGCTGGCCGGGCTGCCCTTGAAGGTCTCGTACGCG 108334 Query 153291 CCGTCGCGTTGGGCCAGTTCGC-AGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGC 153349 || || | |||| || || | ||||| | |||| || |||| || || || Sbjct 108333 CCCTCCTCCTTCGCCATCTCCATAGAT-GCCTCCACCGCGGCAAAGTAGATCGTCTCAAA 108275 Query 153350 GATTTGTTTATTGAGAACGGC--CGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACA 153407 ||| | ||| | | || ||| || ||||| | | |||| |||||||| | Sbjct 108274 GATCTCCGCATTCAC--CCGCTGCGCCTCGGCGCTCACAAAAGGCAGACGCAGCAGAATG 108217 Query 153408 AAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGC 153467 || ||||| ||||| ||||| | ||||| ||| ||||| || | | ||||||||| Sbjct 108216 AACGCGTCTGCCAGGCCCTGCACACCGAGGCCAATGGGGCGGTTGCGCATGTTGCTGCGA 108157 Query 153468 CTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACC 153527 ||| || | | ||| |||| ||||| ||||| | ||| |||||||| | | Sbjct 108156 AGCGCCGTCTCAACGGGGTAGTAGTTGCGGTCGATCACACGGTTCAGGTTGCGTGTGATC 108097 Query 153528 ACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGT--ACGC 153585 || || | | | || || | ||| | ||| | ||| | ||| ||| Sbjct 108096 TGCTTCGTGACAGTGTAGAGCAGCTTGTGATCG-ATCTCACG-CTTCGCCTCGTCGACGA 108039 Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTAC 153644 | || | || || || || || || || ||||| ||||| || |||| | ||||| Sbjct 108038 AGCGGGGTAGCGCGATGGAGGCAAGGTTGCACACGGCGGTCTCCTCCGGCGAGG-TGTAC 107980 Query 153645 TGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTT 153704 | || ||||| | || ||||| ||| || ||| ||| | || | ||| || Sbjct 107979 TCAACTATCTCCGTACACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGAC 107920 Query 153705 TTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCG 153764 |||| ||||||||||| ||| | || ||| |||| |||| ||||| | |||| ||| Sbjct 107919 TTGCCGTTGCACGCGTCCTTGTACAGGATGAACGGCACGCCCGTCTCAATCTGCGACTCG 107860 Query 153765 ACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGC-CGATAGCGGCCCTCGCT 153820 | |||| |||| || |||||||| | | |||| || | |||||||| Sbjct 107859 AGGATAGCGAACCA---CACCTCCTGCGCCTGAATAGTCTGCACGCCA-CGGCCCTCCGC 107804 Query 153821 CTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACA 153880 |||||| ||||| || || ||||| ||||| |||||||||||||| | ||| ||||| Sbjct 107803 CTCGTAGCGCTCATATAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAAGCCCGGACA 107744 Query 153881 CTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATC 153940 | ||| |||||||| |||| | | ||| || || || ||||||||| || Sbjct 107743 GGCGTTCGGGTCCATCAGCGTCCACTTCCCTTCGCTCTTCACACGCTTCATGAACAGGTC 107684 Query 153941 CGGCACCCAGAGCGCGTACATGAGGTCGCGCGC---CTTGCAATCCTCCGCGCCCATGTT 153997 || ||||| || ||||| | || || ||||| || | || ||| ||| |||| Sbjct 107683 GGGGACCCACAGGGCGTAGAACAGATCACGCGCACGCTGG---TCGTCCTTGCCGGTGTT 107627 Query 153998 GCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAG 154057 ||| ||||| || | | | |||||||||||||||| || || | ||| ||||| | Sbjct 107626 GCGCTTCAGGAGCAGAAAACCAAAGATGTCGGCGTGCCACGGCTCCAGGTACACGGCGAA 107567 Query 154058 GGCACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCG 154114 ||||| || ||||| || ||||| || |||| ||| | | |||||||| || || Sbjct 107566 AGCACCCTTGCGCTTACCACCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAACACACG 107507 Query 154115 CACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT--CG--AATTGATCTTGCTGCCGC 154170 || ||| ||| ||| ||| | | |||||||| || || ||| | ||| | || Sbjct 107506 CAGCATCGGTACCAATCCGTTCGACGTGCCGTTCGTGCCGGCAATGTAGCTTCCAGC--- 107450 Query 154171 GGGCGCGCACTTGATGCACGTTAACGCCAATGCCG-CCGCCGTACTTTGAT-ATGGCAGC 154228 ||||| | | ||||||| | |||||||||| |||||| ||||| | ||| | || Sbjct 107449 -AGCGCGGATATTGTGCACGTGCAGGCCAATGCCGCCCGCCG--CTTTGCTGATGACGGC 107393 Query 154229 GCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAA 154288 || || ||| || ||| |||||||||||||| ||||| | | | | |||||| Sbjct 107392 ACACTCCTTCAGGGTGTCGTAAATGCCGTCGATGCTGTCGTCCTTCATGGCCACCAAGAA 107333 Query 154289 ACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT 154348 ||||| | ||| ||||| | |||| || || |||||||| || | |||||||| Sbjct 107332 GCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTTGGCGTGGCGTGCGT 107273 Query 154349 AAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCG-TCTTCGATATCATCGCCGT 154407 || | | | ||||| |||||| ||| || ||||| | ||| | || Sbjct 107272 GAAGAATCCCTTCGACATCAATTCGTACGTCTCGCGCACGTTCTTC-AAATCCCTGAGGT 107214 Query 154408 GAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 | |||||||| ||||| |||| || || |||||||| || || Sbjct 107213 GGATGCCGAGAGCGACACGCAGGAACAACTGCTGCGGCCGCTC 107171 >seq14 Length=160581 Score = 167 bits (184), Expect = 2e-36 Identities = 369/542 (68%), Gaps = 11/542 (2%) Strand=Plus/Plus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | || || || ||| | |||||||||| || ||||| ||||||| || Sbjct 143235 GCTGCTGCACGCAATCCAG-ACGATCCCGTGCGTTCAGAAGAAGGCGGAGTGGGCTGTGC 143293 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 ||||||| |||| | || | ||| | | |||| || | | ||||||| || Sbjct 143294 GTTGGATCGGGAGCCGC---GCGA-GCTTCCAGGAGCGGCTGATCGGCTTCGCCGCGGTT 143349 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | || || ||||| || ||| | || | | || | | || | Sbjct 143350 GAGGGCATATTCTTCTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTG 143409 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| ||||| |||||||||||| | || ||||| ||||| || |||||||||||| Sbjct 143410 ATGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACGGAC 143469 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || ||||||||| |||| | ||| | | | | || || || | || || Sbjct 143470 TTCGCGTGCCTCCTCTACGACTCGCACATCAAGCACAAGCTGCCCCGTGAGCGCGTTCTG 143529 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| || || ||||| | | ||||||||| || Sbjct 143530 GAG-ATCATCGTGGACGCGGTGAACATTGAGCGCGAGTTCATCTGCGACGCGCTGCCTGT 143588 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 | || | |||||||||||| | |||| |||||||||||||||||||||| || Sbjct 143589 GCGGTTGGTCGGCATGAACGCGGACCTGATGTCGCAGTACATCGAGTTTGTGGCGGACCG 143648 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| ||| ||| ||||| ||| | ||||| || || | Sbjct 143649 GCTGCTTGTGTCGCTGGGGCTCGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTTCA 143707 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATA 52839 || | | || ||||| | |||||||| ||||| ||||||||| ||||| |||||| Sbjct 143708 TGGAGATGATCTCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGTGAGTATC 143767 Query 52840 AG 52841 || Sbjct 143768 AG 143769 >seq24 Length=140537 Score = 147 bits (162), Expect = 2e-30 Identities = 253/362 (70%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| ||||| |||||||||||| | || ||||| ||||| || |||||||||||| Sbjct 186 ATGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACGGAC 245 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| |||| | ||| | | | | || || || | || || Sbjct 246 TTTGCGTGCCTGCTCTACGACTCGCACATCAAGCACAAGCTGCCCCGTGAGCGCGTTCTG 305 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| || ||| || || ||||| | | ||||||||| || Sbjct 306 GAG-ATCATCGTGGATGCAGTGAACATTGAGCGCGAGTTCATCTGCGACGCGCTGCCTGT 364 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | ||||||||||| | |||| ||||||||||||||||||| || || Sbjct 365 GCGGCTGATCGGCATGAACGCTGAACTGATGTCGCAGTACATCGAGTTTGTGGCAGACCG 424 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| ||| ||| ||||| | || | ||||| || || | Sbjct 425 GCTGCTTGTGTCGCTGGGGCTCGAGAAGCACTACAACG-TGGCGCAGCCGTTCGACTTCA 483 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATA 52839 || | | || ||||| | |||||||| ||||| ||||||||| ||||| |||||| Sbjct 484 TGGAGATGATCTCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGTGAGTATC 543 Query 52840 AG 52841 || Sbjct 544 AG 545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254856811520