Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq24 134 2e-26 seq14 120 5e-22 >seq24 Length=140537 Score = 134 bits (148), Expect = 2e-26 Identities = 339/508 (67%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||||||||| ||||| |||||||| | || || || |||||||| |||| Sbjct 532 ACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAAC 473 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || | | ||||| ||| ||||| | || || | | | |||| || |||||||||| Sbjct 472 GGCTGCGCCACGTTGTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCTGCCACA 413 Query 159764 AATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| || | ||||| | ||| ||| || || | ||||| || || ||||| Sbjct 412 AACTCGATGTA-CTGCGACATCAGTTCAGCGTTCATGCCGATCAGCCGCACAGGCAGCGC 354 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || | | ||||| |||||| | || || || | |||| | || || || Sbjct 353 GTCGCAGATGAACTCGCGCTCAATGTTCACTGCATCCACGATGATCTCCAGAACGCGCTC 294 Query 159883 GTACCCCGGCTTGCCCAAAATGTG---GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | ||||| | ||||| ||| | | || |||||||||||||| ||| Sbjct 293 ACGGGGCAGCTTGTGCTTGATGTGCGAGTCGT---AGAGCAGGCACGCAAAGTCCGTGTG 237 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 ||| |||||||| || ||||||| ||||||| | | | || || ||||| | ||| || Sbjct 236 CAGGCCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCG 177 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCG 160058 | || ||||| || | | |||| || ||| | |||| || || ||||| || || | Sbjct 176 CTTCTTCAGCCAGAACA-GCGCGCAGAACGACCCCGAAAAGAATATGCCCTCTACCGCAG 118 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCC 160118 | || | | |||| ||| || ||| | || | | |||| | | |||| Sbjct 117 CGAAGCCGATCAGCCGCTCCTGGAAGCTAGCGCCGCTGCC---GATCCAACGTACAGCCC 61 Query 160119 ATTCAGCCTTCTTTGCGATGCACGGCAT 160146 | || |||||||| ||||||||| || Sbjct 60 ACTCCGCCTTCTTCTGGATGCACGGGAT 33 >seq14 Length=160581 Score = 120 bits (132), Expect = 5e-22 Identities = 254/375 (68%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||||||||| ||||| |||||||| | || || || |||||||| |||| Sbjct 143756 ACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAAC 143697 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || | | |||||| ||| ||||| | || || | | | |||| || ||| |||||| Sbjct 143696 GGCTGCGTCACGTTGTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCCGCCACA 143637 Query 159764 AATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| || | ||||| | || ||| || || | || || || || ||||| Sbjct 143636 AACTCGATGTA-CTGCGACATCAGGTCCGCGTTCATGCCGACCAACCGCACAGGCAGCGC 143578 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || | | ||||| |||||| | ||||| || | |||| | || || || Sbjct 143577 GTCGCAGATGAACTCGCGCTCAATGTTCACCGCGTCCACGATGATCTCCAGAACGCGCTC 143518 Query 159883 GTACCCCGGCTTGCCCAAAATGTG---GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | ||||| | ||||| ||| | | ||||||||||| ||||| ||| Sbjct 143517 ACGGGGCAGCTTGTGCTTGATGTGCGAGTCGT---AGAGGAGGCACGCGAAGTCCGTGTG 143461 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 ||| |||||||| || ||||||| ||||||| | | | || || ||||| | ||| || Sbjct 143460 CAGGCCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCG 143401 Query 160000 CGGTTTGAGCCAAAA 160014 | || ||||| || Sbjct 143400 CTTCTTCAGCCAGAA 143386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795143113640960