Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14 286 3e-72 seq24 197 1e-45 >seq14 Length=160581 Score = 286 bits (316), Expect = 3e-72 Identities = 568/830 (68%), Gaps = 16/830 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| ||| || ||||| || || ||||| ||||| || || || || || || | Sbjct 143784 CATCACACCAGCCTTCTGATACTCACCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTG 143725 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 || || || | | ||| || || || || | | |||||||||||| | ||| Sbjct 143724 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTCTCGAGCCC 143665 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCA 132767 ||| || ||||||| ||| ||||| ||||||||||| |||||||| | | ||| Sbjct 143664 --CAGCGACACAAGCAGCCGGTCCGCCACAAACTCGATGTACTGCGACATCAGGTCCGCG 143607 Query 132768 ATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGA 132826 | | | || | || ||||| |||||||| ||| || ||| || |||| ||| | Sbjct 143606 TTCATG-CCGACCAACCGCACAGGCAGCGCGTCGCAGATGAACTCGC-GCTCAATGTTCA 143549 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGC---T 132883 ||||||| || ||| ||| ||||||| | | | || ||| | ||| | Sbjct 143548 CCGCGTCCACGATGATCTCCAGAACGCGCTCACGGGGCAGCTTGTGCTTGATGTGCGAGT 143489 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 | | | | ||| || ||||| |||| ||||||||| | || ||||| ||||||| Sbjct 143488 CGTAGAGGAGGCACGCGAAGTCCGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGC 143429 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| |||||||| || ||||| || || ||||| || | ||| ||| | Sbjct 143428 TGAAGGTCAGCCCGGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACC 143369 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||| | |||||| || || ||||| | | ||| ||||| ||| | || Sbjct 143368 CGGAGAAGAATATGCCCTCAACCGCGGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCGC 143309 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 ||| ||||||| |||| ||||| || ||||| | | |||||||| ||||| | Sbjct 143308 G---GCTCCCGATCCAACGCACAGCCCACTCCGCCTTCTTCTGAACGCACGGGATCGTCT 143252 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 143251 GGATTGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCAAGCAGC 143193 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | |||||||| | ||||||||| | || |||||||| ||| ||| Sbjct 143192 ACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAACTGGAAGCCGTAGAAGGCGCGC 143133 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| ||||||||||| Sbjct 143132 GCCTCCGGCACCTTCACGTCGGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATGCCG 143073 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 ||||| | || ||||| || || |||||||||||||| || |||||| |||||| || Sbjct 143072 TCGCTCCCTGCAAAAAAAGCAAGGACGTGCTTGATGAAGTGCCGCTCGCCGTCGTTTAAC 143013 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 ||||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 143012 TTCTCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 142963 >seq24 Length=140537 Score = 197 bits (218), Expect = 1e-45 Identities = 387/566 (68%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||||||| || ||||| || || ||||| ||||| || || || || || || | Sbjct 560 CATCACGCCAGCCTTCTGATACTCACCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTG 501 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 || || || | | ||| || || || || | || |||||||||||| | ||| Sbjct 500 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGCCACGTTGTAGTGCTTCTCGAGCCC 441 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAA 132768 ||| || ||||||| ||| ||||| ||||||||||| |||||||| ||| Sbjct 440 --CAGCGACACAAGCAGCCGGTCTGCCACAAACTCGATGTACTGCGACATCAGTTCAGCG 383 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 || | || | ||| ||||| |||||||| ||| || ||| || |||| ||| || Sbjct 382 TTCATGCCGATCAGCCGCACAGGCAGCGCGTCGCAGATGAACTCGC-GCTCAATGTTCAC 324 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGC---TT 132884 || || || ||| ||| ||||||| | | | || ||| | ||| | Sbjct 323 TGCATCCACGATGATCTCCAGAACGCGCTCACGGGGCAGCTTGTGCTTGATGTGCGAGTC 264 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | | | || ||| |||||||| |||| ||||||||| | || ||||| |||||||| Sbjct 263 GTAGAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCACGCGAGATGAGCTCGTTGCT 204 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| |||||||| || ||||| || || ||||| || | ||| ||| || Sbjct 203 GAAGGTCAGCCCGGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCC 144 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 ||||||||| | |||||| || || ||||| | | ||| ||||| ||| | || | Sbjct 143 CGAAAAGAATATGCCCTCTACCGCAGCGAAGCCGATCAGCCGCTCCTGGAAGCTAGCGCC 84 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124 |||| ||||||| || | ||||| || ||||| | | || |||||| ||||| | Sbjct 83 ---GCTGCCGATCCAACGTACAGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTG 27 Query 133125 GATGGCGTTCAACAAACGGAGTTTCT 133150 ||| |||| || || || || |||| Sbjct 26 GATCGCGTGCAGCAGCCGCAGCTTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165197373440