Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq610 331 1e-85 seq206 174 2e-38 seq38 125 9e-24 >seq610 Length=4050 Score = 331 bits (366), Expect = 1e-85 Identities = 855/1293 (66%), Gaps = 21/1293 (2%) Strand=Plus/Plus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || ||||| | || |||||||| || | | || | || || Sbjct 907 CGTCGAGAAGATCTGGCTCTTCTTCGTCGGGATCGTCGTGTTGCGCTTGATCAGCGCCGT 966 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | ||||| ||| || | || || | ||| || |||||||||| || | || Sbjct 967 CATCACGCCACCGGCAGTCTCAATGCCCAGCGTCAGCGGCGTCACGTCCAGCAGCAGCAA 1026 Query 6988 GTCTTGAACAGATTCGTTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | | | | | | | | ||| | || || | |||| || || |||| || ||| Sbjct 1027 GCCCTC--CGTCTGCTTGCTCTTGCCGCCGGTCAGGATGAACGCCTGCACCGCAGCGCCG 1084 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || ||||| |||||||| || | || ||||| || || ||| || | || Sbjct 1085 TACGCCACGGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGCCGAAGAAGTCG 1144 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || | |||||||| || || || ||||| |||| |||| || | | Sbjct 1145 GACACAAGGCTCTGCACCTTCGGGATACGCGTGGAGCCACCCACCAGCACGACGTCGTGC 1204 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || ||||| | ||| | || || ||||| | || | Sbjct 1205 ACGGAGCGCTTGTCCATCTTCGCGTCCTGCAGCACGCGCTCCACAGGCTGGATCGTGCTG 1264 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| ||| ||||| ||||| || || || ||||| |||| || | ||| || Sbjct 1265 CGGAACAGGTCGCCGCACAGCTCCTCGAAGCGCGCGCGGGTGATGGTTGCCTGGAAGTCC 1324 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 ||| |||| | | || || || || || || | || | || || || | ||| ||| Sbjct 1325 ACGTTGTCGAACAGCGCGTCGATCTCGATCGTCGCCTGCGTCGCGGACGACAGCGTGCGC 1384 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || |||||||| || || || || | || || || | ||| |||| || | || Sbjct 1385 TTGGCGCGCTCGCAGGCAGTGCGCAGGCGGCGCAGAGAGCGCTGGTTCGACGACAGGTCC 1444 Query 7406 TT---CTTATGTTTACGTTTAAACTCTTCAGAGAAGT--GTCGAAGGAGTCTCGAATCGA 7460 || ||| | ||||| || ||||| || ||||| ||| | || | ||| | Sbjct 1445 TTGCCCTTGTTCTTACGCTTGAACTCCTCGCAGAAGAACGTC--ACCAGGCGGTTATCAA 1502 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || ||||| || | ||| || | || || || || || || ||||| || || | Sbjct 1503 AGTCCTCACCGCCGAGGTGGGTGTTGCCGTTCGTGGCCTTCACCTCGAAGATGCCGCCGT 1562 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 | || | | || || ||||| |||||||| |||||||| || || || || ||||| Sbjct 1563 CGATCGTCAGCAGCGTCACATCGAACGTACCGCCACCCAGATCGAAGATCAGCACGTTGC 1622 Query 7581 TATCGT---CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | |||| | | ||| || ||||||||||||||||| || || || || || | Sbjct 1623 GCTCCTTGCCGTCGTCGCCCTTGTCCAGACCGTACGCGATAGCAGCGGCGGTCGGCTCGT 1682 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || || || || | ||||||||| || || | || || |||||||| || || | Sbjct 1683 TGATGATGCGCAGCACCTCCAGGCCAGCGATCGTGCCGGCGTCCTTCGTCGCCTGGCGCT 1742 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| |||||||| || ||||| || || || | | | || | ||| ||||| | Sbjct 1743 GGGAGTCGTTGAAGTAGGCGGGCACCGTCACCACGGCCTTCTTCACCTGCTTGCCGAGGT 1802 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 ||| || || | || ||||| || || |||||||| ||||| || | || | Sbjct 1803 ACGCCTCAGCCGTCTCCTTCATCTTCAGCAGCACCATCGAGCTGATCTCCTCCGGCGTGA 1862 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC--CGCAGCACCGGG 7875 || ||| || |||| || | || | |||| ||| || || ||| | || Sbjct 1863 ACGTCTTCTCCTCGCCGTGGAACTGCACGACGATCACGGGCTTGTCGTCGC-CCTTCGTC 1921 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | | ||||| | | ||| | ||||| || | || || ||| ||||| | Sbjct 1922 G-TCACCTTGAAGGGCCAGTGCTTCATGTCCGCCTGCACGACAGAGTCGTTGAACTTGCG 1980 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || || ||||| || || || || ||||| | |||||||| || |||||||| Sbjct 1981 GCCAATCAGGCGCTTCGCGTCGAACACCGTGTTGTGCGGGTTCATCGCGACCTGGTTCTT 2040 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || ||||| ||||| || | | ||||| ||||| |||||||| || ||||| Sbjct 2041 CGCGGCATCGCCGATCAGACGCTC---AGTGTCCGTGAACGCAACGTACGACGGCGTCGT 2097 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||||||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 2098 GCGGTTACCCTGGTCGTTCGCAATGATCTCCACGCGCTCGTTCTGCCACACGCCAACGCA 2157 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||| ||||| || || | |||||||| || || Sbjct 2158 CGAGTACGTCGTGCCCAGGTCAATACCAATAGC 2190 >seq206 Length=48879 Score = 174 bits (192), Expect = 2e-38 Identities = 408/612 (67%), Gaps = 9/612 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | || ||||| || || || || || || || |||| || Sbjct 3241 ATCGAAGTCCTCGCCACCGAGATGGGTATCACCAGCCGTGGCCTTCACCTCGAAGACGCC 3300 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||| || | |||| || |||||||||||||| |||||||| || || || || || Sbjct 3301 GCCTTCGATCGTCAACAGCGTCACATCAAACGTACCGCCACCCAGATCGAAGATCAGCAC 3360 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 |||| | || | | | |||||| || | ||||||||||| || || || || || Sbjct 3361 GTTCTTCTCACCTTTATCGTTCTTGCGGTCCATTCCGTACGCGATGGCGGCGGCGGTCGG 3420 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || || || || ||| ||||| || || | | || || |||||||| || Sbjct 3421 CTCGTTGATGATGCGCAGCACGTTGAGGCCCGCGATGGAGCCTGCGTCCTTCGTCGCCTG 3480 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || ||||| ||||||||||| ||||| || || |||||| |||| | | || Sbjct 3481 ACGCTGGGAGTCGTTGAAGTAGGCCGGCACCGTCACCACGGCGTCCTTGACCGCCGTTCC 3540 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||| |||| || || | || ||||| || || ||||||| || || ||||| | Sbjct 3541 GAGGTACGCCTCAGCCGTCTCCTTCATCTTTTGCAGCACCATCGCGGAGATTTCTTCGGG 3600 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 ||| || || || | | || || | | | ||| || || | | | Sbjct 3601 GAAGAACGTCTTGGTGGATCCCTGGTACTCCACGTTGACGACGGGCTTGCCCTC--CTTC 3658 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | | | ||||| | | ||| | ||||| || || | | |||| ||||| Sbjct 3659 GTCG-TCACCTTGAAGGGCCAGTGCTTCATGTCCGACTGCAGATCCGGGTCGTCGAACTT 3717 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | ||||| ||||| || | |||||| |||||||| || ||||| Sbjct 3718 GCGCCCGATCATGCGCTTCGCATCGAAGATTGTGTTGAGCGGGTTCATCGCAACCTGGTT 3777 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 |||||| || || |||| | || || | ||||| || ||||||||||| || || Sbjct 3778 CTTCGCGGCATCGCCGACCAAGCGCTC---TGTCTCCGTGAAGGCGACGTACGACGGCGT 3834 Query 8053 CGTTCGATTCCC 8064 ||| || || || Sbjct 3835 CGTGCGGTTACC 3846 >seq38 Length=122924 Score = 125 bits (138), Expect = 9e-24 Identities = 232/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | ||| || || || ||||| || ||||||| || Sbjct 94905 ATCGAAGTCCTCGCCACCAAGGTGGGTGTCACCGTTCGTCGCCACCACCTCAAAGAAGCC 94964 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | | || || | | | ||| ||||||||||| |||||||||||||| || | || | Sbjct 94965 TTCGTCGATCGTCAGAAGCGACACATCAAACGTGCCACCACCCAGGTCGAAGACAAGGAT 95024 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | || || | ||||| |||||| || || ||||| || || || || || Sbjct 95025 GTTCTTCTCACCGGCCTTGTT------GAGACCATAGGCAATAGCAGCGGCAGTCGGCTC 95078 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || ||||| |||| ||| || || || || | | | || || || || || || Sbjct 95079 GTTGATAATGCGAACCACGTTGAGACCGGCGATCTTACCAGAGTCCTTGGTAGCCTGGCG 95138 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||| || ||||| || || |||| | | || |||| ||||| Sbjct 95139 CTGAGCGTCGTTGAAGTAGGCAGGCACCGTCACCACGGCGTTCTTCACCTTCTCGCCGAG 95198 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 | | |||| ||| || ||||| || || ||||||| Sbjct 95199 GAAGGTCTCCGAGATGTCCTTCATCTTCTGTAGCACCATCG 95239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123145981440