Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq31 120 4e-22 seq53 93.3 5e-14 seq50 82.4 9e-11 seq29 82.4 9e-11 >seq31 Length=128647 Score = 120 bits (132), Expect = 4e-22 Identities = 522/808 (65%), Gaps = 31/808 (4%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || || ||||| ||| |||||||| | Sbjct 108033 GGTAGCGCGATGGAGGCAAGGTTGCACACGGCGGTCTCCTCCGGCGAGGTGTACTCAACT 107974 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||||| ||| || | ||| || || || | ||||| ||||| ||| | Sbjct 107973 ATCTCCGTACACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCCG 107914 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 |||||||| |||||||| || ||| | ||| |||||||| |||| |||| ||| || Sbjct 107913 TTGCACGCGTCCTTGTACAGGATGAACGGCACGCCCGTCTCAATCTGCGACTCGAGGATA 107854 Query 106637 GCCTTCCACACATCG-GCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 106692 || |||||| || ||| ||| ||| | | ||| || |||||||||||||| Sbjct 107853 GCGAACCACACCTCCTGCGCCTG----AATAGTCTGCACGCCACGGCCCTCCGCCTCGTA 107798 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG--TGCCTTG 106750 || ||| || |||||||| || ||| | || || | | | Sbjct 107797 GCGCTCATATAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAAGCCCGGACAGGCGT- 107739 Query 106751 TCTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || | | || | ||| || | | ||| || || ||||||||||| ||||| || Sbjct 107738 TCGGGTC-CATCAGCGTCCACTTCCCTTCGCTCTTC-ACACGCTTCATGAACAGGTCGGG 107681 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 | |||||||| | || ||||| || | | || |||| ||||| | || | Sbjct 107680 GACCCACAGGGCGTAGAACAGATC---ACGCGCACGCTGGTCGT--CCTTGCCGGTGTTG 107626 Query 106870 TAACTCA-----AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 ||| || || | | ||| || |||||||| ||||| || || || |||| | Sbjct 107625 CGCTTCAGGAGCAGAAAACCAAAGATGTCGGCGTGCCACGGCTCCAGGTACACGGCGAAA 107566 Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 | ||||| || || ||| | || | || ||||| || ||| ||| || || || Sbjct 107565 GCACCCTTGCGCTTACCACCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAACACACGC 107506 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT-TATTGGC 107040 ||||| || | | || | || || || || || ||| || || | || Sbjct 107505 AGCATCGGTACCAATCCGTTCGACGTGCCGTTCGTGCCGGCAAT-GTAGCTTCCAGCAGC 107447 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACT 107099 | | || || | ||||| ||||| || || | || ||||| ||| ||||||| Sbjct 107446 GCGGATATTGTGCACGTGCAGGCCAATGCCGCCCG-CCGCTTTGCTGATGACGGCACACT 107388 Query 107100 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 107159 || | || || | || || |||| ||| ||| ||||| |||| | | |||||| Sbjct 107387 CCTTCAGGGTGTCGTAAATGCCGTCGATGCTGTCGTCCTTCATGGCCACCAAGAAGCACG 107328 Query 107160 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 | ||||||||| | || || || || |||||||||||||| || ||||| |||| | Sbjct 107327 AGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTTGGCGTGGCGTGCGTGAAGA 107268 Query 107220 TACCTTGGGACATCTTGTCGTATGTCTC 107247 || | |||||| ||||| ||||| Sbjct 107267 ATCCCTTCGACATCAATTCGTACGTCTC 107240 >seq53 Length=102387 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 13205 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 13146 Query 136224 CAGGTAGGAGC 136234 | ||||||||| Sbjct 13145 CTGGTAGGAGC 13135 >seq50 Length=106123 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 11379 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 11320 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 11319 CAGGTAGGAG 11310 >seq29 Length=133705 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 29165 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 29106 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 29105 CAGGTAGGAG 29096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971832291840