Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq176 136 3e-27 seq7 91.5 1e-13 >seq176 Length=55057 Score = 136 bits (150), Expect = 3e-27 Identities = 400/602 (66%), Gaps = 26/602 (4%) Strand=Plus/Plus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 ||||||| || || |||| |||||||||||| || ||||| ||||| || | || Sbjct 8104 TTCAGCGCCTCGACATGATTTCTGTAGACGTGAGCATCGCCCAGCGTGTGCACCAGTTCA 8163 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGAT 29918 ||||| || || || | | || |||| ||| ||| | ||| ||||| |||||| Sbjct 8164 CCCGGACGCAGGCCCGTCGCCTTCGCAATCA-GTATCGTCAAGAGGGAGTACGAGGCGAT 8222 Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 ||| ||||| || || || |||||||| | ||| | |||||| ||| || |||||||| Sbjct 8223 GTTGAAGGGCACGCCAAGGCCCATGTCACACGAGCGCTGGTACAGCATGCATGAGAGCTC 8282 Query 29979 -------TCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGA 30031 ||||| | ||||||| ||||| | || |||||| || || || ||||| Sbjct 8283 CGACTTTTCCGT-GTTCACGTAGAACTGGCCCAGTAAGTGGCAAGGGGGCAGCGCCATCT 8341 Query 30032 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30091 | || | |||||||| ||| | || || || | ||| | ||| || ||| Sbjct 8342 TGGACAGCGCGGACGGGTTCCACGCGATGAAGAGCATCCGACGGTCGTTTGGATT-TTCT 8400 Query 30092 TGATGAG---GTCCACG-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC- 30146 | |||| || |||| | | ||| | ||||||||| ||| || ||| | || Sbjct 8401 T--TGAGCGTGTTCACGATCATCTTG-ATCTGATCCACGCCCTCACCTTCGTAATTCGCG 8457 Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206 | || | || ||||||| || || || || | ||||||||| ||||| || || ||||| Sbjct 8458 TCGCA-GCCCTTGTACTCCGCGCCAAAGTGGCGCCACTGGAAGCCGTAGACTGGGCCCAG 8516 Query 30207 GTCTCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263 | ||| || ||| ||| ||| || || | |||| | || || | || ||||| Sbjct 8517 G--TCCATC-TCCTTGTTCTCCGTGAGCCCGCGGCTGTCAAGGAACTCGCGCGAGCCGTT 8573 Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30323 | | |||||||| | | |||| |||| || | || ||| || || | | Sbjct 8574 GCCATCCCAGATGTGAATGTCCTTGTCGGCCAGGAGCTGGGCGTTCGTCTCACCACGCAG 8633 Query 30324 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 |||||| | ||||||||| ||| | ||| || || | |||||||| || || || Sbjct 8634 GAACCATATCAGCTCCTCACAGACACCACGCCAGAACACACGTTTGGTCGTAAGCAGCGG 8693 Query 30384 AA 30385 || Sbjct 8694 AA 8695 >seq7 Length=230934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 52019 CAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTT-TGCGTCGTTCA 52077 |||||||| | | | ||| || | ||| | || ||||||||||| ||| | || Sbjct 200267 CAAGGTGAAGATCCGCACCATCAAGATCCCCAACATCGGCGACAAGTTCTGCAGCCGCCA 200326 Query 52078 CGGCGCAAAAGGGGACGTGCGGAG--CCGTCCTGACCCAGGAGGACATGCCCTTCGACAA 52135 ||| ||| ||||| || ||| | || | | ||||||||||||||||||| || Sbjct 200327 CGG-GCAGAAGGGCACCAACGGCATTCAGTTCCG--CCAGGAGGACATGCCCTTCAACCG 200383 Query 52136 GGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGACCGT 52195 ||||| || ||||| |||||||| ||||||||||| ||| |||| ||| | ||||| || Sbjct 200384 TGACGGCGTCGTGCCGGACCTCATTATCAACCCCCATGCCATTCCCTCCCGCATGACGGT 200443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408611544287168