Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq31 158 2e-33 seq14 154 3e-32 seq24 138 2e-27 >seq31 Length=128647 Score = 158 bits (174), Expect = 2e-33 Identities = 695/1081 (64%), Gaps = 47/1081 (4%) Strand=Plus/Minus Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCAT 221490 |||||| |||||||||||| | || | | || ||||||| || |||| Sbjct 108289 GTAGATCGTCTCAAAGATCTCCGCATTCACCCGCTGCGCCTCGGCGCTCACAAAAGGCAG 108230 Query 221491 ACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 |||||||| |||| | |||| ||||| ||||| || |||| || ||||| | || | Sbjct 108229 ACGCAGCAGAATGAACG-CGTCTGCCAGGCCCTGCACACCGAGGCCAATGGGGCGGTTGC 108171 Query 221550 TCCTGTTG----GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 | ||||| |||||| ||| || ||||| || ||||| |||||||| | | Sbjct 108170 GCATGTTGCTGCGAAGCG-CCGTCTCA---ACGGGGTAGTAGTTGCGGTCGATCACACGG 108115 Query 221606 TTGAGGTTCAGAGTGATGA-CTT--TAACCACCTCGGTCAGCTTCTGGTGATTGAACACC 221662 || ||||| | ||||| ||| | || | | |||||| ||||| || | | Sbjct 108114 TTCAGGTTGCGTGTGATCTGCTTCGTGACAGTGTAGAGCAGCTT---GTGATCGATCTC- 108059 Query 221663 AACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTT-TAGGGCAACGCTGGCCAGGTT 221721 || | |||| |||| || | ||||| ||| || | | ||| ||||| Sbjct 108058 -ACGCTTCGCC-TCGTCGACG----------AAGCGGGGTAGCGCGATGGAGGCAAGGTT 108011 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 |||||||| ||| ||| ||| |||| | ||||| ||||| ||||| ||| Sbjct 108010 GCACACGGCGGTCTCCTCCGGCGAGGTGTACTCAACTATCTCCGTACACAGGTTCGAGCA 107951 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||||||| || |||| || || || ||||||| ||| ||||||||||| || || Sbjct 107950 CTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCCGTTGCACGCGTCCTTGTACAGGAT 107891 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCT 221901 || || |||| ||||| | ||| | | | || || | ||| | || ||| || Sbjct 107890 GAACGGCACGCCCGTCTCAATCTGCGACTCGAGGATAGCGAACCACACCTC-CTGCGCCT 107832 Query 221902 CACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAA 221958 | | ||| || ||| |||| | || | || | ||| || || || Sbjct 107831 GAA--TAGTCTGCACGCCACGGCCCTCCGCCT---CGTAGCGCTCATATAGGCGCTCGAA 107777 Query 221959 CTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG-CGGGACACATCAGACTCCAGT 222017 || || ||||| || || ||| ||||| | |||| | |||||| |||| | Sbjct 107776 CTCCTCGCCGTAGCAGTCACTCAAGCCCGGACAGGCGTTCGGGTC-CATCAGCGTCCACT 107718 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | | | || || | || |||||| ||||| |||| |||||| || | || |||| Sbjct 107717 TCCCTTCGCTCTTCACACGCTTCATGAACAGGTCGGGGACCCACAGGGCGTAGAACAGAT 107658 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | | ||||| || ||| |||| |||| | |||| || ||| |||| |||| Sbjct 107657 CACGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGGAGCAGAAAACCAAAGATGT 107598 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 | ||||||||||||||||| || ||||| | ||| || ||||| |||||||| | Sbjct 107597 CGGCGTGCCACGGCTCCAGGTACACGGCGAAAGCACCCTTGCGCTTACCACCACCCTGGT 107538 Query 222198 CCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 |||| | | |||||| | || || ||||||||| |||||| || | Sbjct 107537 CCACGTAGCGGGCGGTGTTGTTGAACACACGCAGCATCGGTACCAATCCGTTCGACGTGC 107478 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCA--GACATGCCGA 222314 |||| ||||| |||||| || | || | || || || ||| || ||| | Sbjct 107477 CGTTCGTGCCGGCAATGTAGCTTCCAGCAGCGC---GGATATTGTGCACGTGCAGGCCAA 107421 Query 222315 TACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCA 222374 | || || || ||| ||| | ||| || ||| || ||||| ||||| || | Sbjct 107420 TGCCGCCCGCCGCTTTGCTGATGACGGCACACTCCTTCAGGGTGTCGTAAATGCCGTCGA 107361 Query 222375 TAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGG 222434 | ||| ||||| | | || || || || || |||||| | || | | | || Sbjct 107360 TGCTGTCGTCCTTCATGGCCACCAAGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGG 107301 Query 222435 CGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCT 222494 |||| || || || || ||||||| || ||| | ||| | ||||||| |||||||||| Sbjct 107300 CGTTGAAGAGGGTTGGCGTGGCGTGCGTGAAGAATCCCTTCGACATCAATTCGTACGTCT 107241 Query 222495 C 222495 | Sbjct 107240 C 107240 >seq14 Length=160581 Score = 154 bits (170), Expect = 3e-32 Identities = 557/858 (65%), Gaps = 23/858 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| | ||||||| || | | || | |||||| || ||||| || Sbjct 142924 GATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGAC 142983 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||| ||| |||||| | | |||| | || | | | ||||| ||| || ||||| Sbjct 142984 CTGGGCAACGACATGAAGGACTGGGAGAAGTTAAACGACGGCGAGCGGCACTTCATCAAG 143043 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG-AGAG 25652 |||| | || || ||||||| || || || || | |||||| || ||| || | Sbjct 143044 CACGTCCTTGCTTTTTTTGCAGGGAGCGACGGCATCGTCATCGAGAACCTC-GCGCAGCG 143102 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || ||| || |||||| |||||||| |||||| || || Sbjct 143103 CTTCATGACCGACGTGAAGGTGCCGGAGGCGCGCGCCTTCTACGGCTTCCAGTTGATGAT 143162 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| ||| | ||| || |||||||| || ||| || Sbjct 143163 GGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTTGACACGTACATCACGGACAGCGA 143222 Query 25773 CGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||| || | |||||| | || ||| || || || || | ||| ||||||| Sbjct 143223 GGAGA-AGCTGCGGCTGCTGCACGCAATCCAGACGATCCCGTGCGTTCAGAAGAAGGCGG 143281 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| || |||||| |||| |||| | || ||||||||| | | || Sbjct 143282 AGTGGGCTGTGCGTTGGATCGGGAGCC---GCGCGAGCTTCCAGGAGCGGCTGATCGGCT 143338 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | || || || |||||||| || ||| ||| ||||| |||| | | |||||||| ||| Sbjct 143339 TCGCCGCGGTTGAGGGCATATTCTTCTCCGGGTCGTTCTGCGCGC-TGTTCTGGCTGAAG 143397 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||||||||| ||| ||||||||||||| | |||||||| Sbjct 143398 AAGCGCGGGCTGATGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGC 143457 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC-ACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || |||| || || || ||||| |||||| || | ||| | ||||| | | | Sbjct 143458 CTGCACACGGACTTCGCGTGCCTCCTCTACGACTCG-CACATCAAGCACAAGCTGCCCCG 143516 Query 26070 AGAGACCG-TCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 ||| || ||| || |||||| || || ||| | || ||| ||||| Sbjct 143517 TGAGCGCGTTCTGGAG-ATCATCGTGGACGCGGTGAACATTGAGCGCGAGTTCATCTGCG 143575 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGAG 26187 | ||||||||| | || || ||| || ||||| ||| Sbjct 143576 ACGCGCTGCCTGTGCGGTTGGTCGGCATGAAC-GCGGACCTGATGTCGCAGTACATCGAG 143634 Query 26188 TATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACA--GT-ACGCC 26243 | |||||| |||| |||| |||| | |||||| |||| | | ||||| || |||| Sbjct 143635 TTTGTGGCGGACCGGCTGCTTGTGTC-GCTGGGGCTCGAGAAGCACTACAACGTGACGC- 143692 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 | ||||||||||| ||||| | || ||| || |||| ||||| |||||||| || || Sbjct 143693 --AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAAGGCAAGACGAACTTCTTCGAGAA 143750 Query 26304 GAGGGTCGGCGACTATCA 26321 || |||||| || ||||| Sbjct 143751 GAAGGTCGGTGAGTATCA 143768 >seq24 Length=140537 Score = 138 bits (152), Expect = 2e-27 Identities = 339/512 (66%), Gaps = 11/512 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||| ||| ||||||| |||||| | |||||| |||| |||||| || Sbjct 40 GCATCCAGAAGAAGGCGGAGTGGGCTGTACGTTGGATCGGCAGCG---GCGCTAGCTTCC 96 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932 ||||||||| | | ||| ||||| || |||||||| || || || ||||| |||| Sbjct 97 AGGAGCGGCTGATCGGCTTCGCTGCGGTAGAGGGCATATTCTTTTCGGGGTCGTTCTGCG 156 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 | | |||||||| ||| || ||| |||||||||||| ||| |||||||||| Sbjct 157 CGC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGGCTGACCTTCAGCAACGAGCTC 215 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC-ACGGGCCACTT 26051 ||| | |||||||| || |||| || ||||| |||||||||||| || | ||| | Sbjct 216 ATCTCGCGTGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTCTACGACTCG-CACAT 274 Query 26052 GCTCCACAAACCTTCTCAAGAGACCG-TCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110 ||||| | | | ||| || ||| || |||||| || || ||| | || | Sbjct 275 CAAGCACAAGCTGCCCCGTGAGCGCGTTCTGGAG-ATCATCGTGGATGCAGTGAACATTG 333 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 || ||||| | ||||||||| ||| | Sbjct 334 AGCGCGAGTTCATCTGCGACGCGCTGCCTGTGCGGCTGATCGGCATGAACGCTGAACTGA 393 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGA 26229 || || ||||| |||| |||||| |||| |||| |||| | |||||| |||| | Sbjct 394 TGTCGCAGTACATCGAGTTTGTGGCAGACCGGCTGCTTGTGTC-GCTGGGGCTCGAGAAG 452 Query 26230 CTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | ||||| | | | ||||||||||| ||||| | || ||| || |||| ||||| Sbjct 453 CACTACAACGTGGCGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAAGGCAAGACG 512 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| |||||| || ||||| Sbjct 513 AACTTCTTCGAGAAGAAGGTCGGTGAGTATCA 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830681559040