Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq31 172 7e-37 seq24 154 2e-31 seq14 154 2e-31 seq221 102 1e-15 seq7 100 3e-15 >seq31 Length=128647 Score = 172 bits (190), Expect = 7e-37 Identities = 224/310 (72%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| || || || ||||| || || | ||||| || Sbjct 107542 CTGGTCCACGTAGCGGGCGGTGTTGTTGAACACACGCAGCATCGGTACCAATCCGTTCGA 107483 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||| ||||| || | |||| || || ||||| | |||||| || | ||| Sbjct 107482 CGTGCCGTTCGTGCCGGCAATGTAGCTTCCAGCAGCGCGGATATTGTGCACGTGCAGGCC 107423 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||||| |||| ||| ||||| || |||| || || |||||||| ||||| || Sbjct 107422 AATGCCGCCCGCCGCTTTGCTGATGACGGCACACTCCTTCAGGGTGTCGTAAATGCCGTC 107363 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| |||| |||||||| |||| | |||||||| | ||||| | || |||||| Sbjct 107362 GATGCTGTCGTCCTTCATGGCCACCAAGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCC 107303 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| || ||||| || ||||| || | |||||| ||||| || Sbjct 107302 GGCGTTGAAGAGGGTTGGCGTGGCGTGCGTGAAGAATCCCTTCGACATCAATTCGTACGT 107243 Query 1630365 GGCGAGCACG 1630374 || ||||| Sbjct 107242 CTCGCGCACG 107233 Score = 104 bits (114), Expect = 3e-16 Identities = 352/542 (65%), Gaps = 10/542 (2%) Strand=Plus/Minus Query 1626984 GTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGT 1627043 ||| || || |||| ||| || ||||| || | | | |||||||| ||||||| ||||| Sbjct 108946 GTCCACCGTGAACTTGATCGCATCGGCAGCCGCCTTCGTGCGCAGGTAGTACACACCGGT 108887 Query 1627044 CTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCGTC 1627103 ||||||||| | ||| | |||| ||||||||||||| | | | || | || Sbjct 108886 CTTGAGGCCACACTCCCAGGTGTAGAAAAGCATCGACGTGATCTGGCCAGAGGTGGGGTT 108827 Query 1627104 GGCGCAGTA-CAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCCA 1627162 |||| | |||||| |||||||| ||||| | || | |||| ||| |||| Sbjct 108826 CT-GCAGGAACAGGTTCAGCGACTGCGATTGGTCAATGTACTGACCGCGGTCGCGGGCCA 108768 Query 1627163 TGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTCGG 1627222 ||||||| || | || | |||||||||||| | ||| |||| ||||| Sbjct 108767 TGTCGATCAGCTTGCGCTGAGGGATCTCCCACACGGTGCGGTAGAGCTCCTTAAGGTCTT 108708 Query 1627223 GCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCTGTCGC 1627282 | || | ||||| | || | | | || |||| | | | | || Sbjct 108707 GGGGGATGCCGTCG-----ATAGACAAG-ATAGACCCGTTTAGGGTAATAATTTCATTGC 108654 Query 1627283 GAAA-GTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACC 1627341 | | ||| | ||||||| |||||| || ||| | | || || | ||||||| Sbjct 108653 GCATCGTCTCGT-TCCACAGTCCGCGCTTGATGAGGTCCATCACGAGATACTTGTTGACC 108595 Query 1627342 ACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCAC 1627401 || | || ||||| ||||| |||||| |||||||||| |||| | |||| | Sbjct 108594 ACCGGGAACTCGCCGCTCAGCACACGGCGCACGTAGATGTTGGACGTGAAGGGCTCGAAG 108535 Query 1627402 GCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGC 1627461 |||| ||||||| || |||||||| || | || || ||||| | |||| || || Sbjct 108534 CACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCTGTCGGCATCGGGGCCAGCAGAAGG 108475 Query 1627462 GAGTTGCGCAGGCCGTGCTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGGCCG 1627521 |||||||||| ||| ||| || | | || |||||||||||||||||| Sbjct 108474 GAGTTGCGCATACCGGTCTGCATCACCTTCTCCTTGAGGCTGTCCCAGTCCCAGCGGCCA 108415 Query 1627522 CT 1627523 || Sbjct 108414 CT 108413 Score = 91.5 bits (100), Expect = 2e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 1627791 GTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACGGCAG 1627850 ||||| |||||||||||| || || | ||| |||| |||||||| | | ||||| Sbjct 108289 GTAGATCGTCTCAAAGATCTCCGCATTCACCCGCTGCGCCTCGGCGCTCACAAAAGGCAG 108230 Query 1627851 GTCCATCATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCG 1627910 || || ||| |||| || ||||||||||| |||| ||| || || |||| ||| Sbjct 108229 ACGCAGCAGAATGAACGCGTCTGCCAGGCCCTGCACACCGAGGCCAATGGGGCGGTTGCG 108170 Query 1627911 CAGGTTCGAGTGGCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAG 1627970 || ||| | | | ||| || ||||||| |||| ||||||||| ||||| || Sbjct 108169 CATGTTGCTGCGAAGCGCCGTCTCAACGGGGTAGTAGTTGCGGTCGATCACACGGTTCAG 108110 Query 1627971 GTTGC 1627975 ||||| Sbjct 108109 GTTGC 108105 >seq24 Length=140537 Score = 154 bits (170), Expect = 2e-31 Identities = 212/292 (73%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| ||||| |||||||| | |||||||||| |||||| | |||||| | | Sbjct 524 CTCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGC 465 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | ||||||||||| ||| || |||||| | ||||| ||||| || ||||||||||| Sbjct 464 CACGTTGTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCTGCCACAAACTCGAT 405 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCAC 868896 |||||| |||| || | |||||||||||||| ||| ||| ||||||| |||| | Sbjct 404 GTACTGCGACATCAGTTCAGCGTTCATGCCGATCAGCCGCACAGGCAGCGCGTCGCAGAT 345 Query 868897 AAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACGTCGGCCGAGG- 868955 ||||| ||| || | || || || |||||||||| || | | || | || || Sbjct 344 GAACTCGCGCTCAATGTTCACTGCATCCACGATGATCT-CCAGAACGCG-CTCACGGGGC 287 Query 868956 -GCTTG---TTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCA 869003 ||||| |||| | || |||||||||||| |||||||| ||||| Sbjct 286 AGCTTGTGCTTGATGTGCGAGTCGTAGAGCAGGCACGCAAAGTCCGTGTGCA 235 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||||| |||| || |||||||| || ||||||||| Sbjct 232 CCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCGCTTC 173 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| ||||| || || |||||||| || || || ||| Sbjct 172 TTCAGCCAGAACAGCGCGCAGAACGACCCCGAAAAGAATATGCCCTCTACCGCAGCGAAG 113 Query 869300 CCGATGAGCCGCTC 869313 ||||| |||||||| Sbjct 112 CCGATCAGCCGCTC 99 >seq14 Length=160581 Score = 154 bits (170), Expect = 2e-31 Identities = 222/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||||||||| ||||| | | |||| | ||| | Sbjct 143179 CCGAGTGGATGTTCTCCATCATCAACTGGAAGCCGTAGAAGGCGCGCGCCTCCGGCACCT 143120 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || ||||||||| |||||||||||||| | || | Sbjct 143119 TCACGTCGGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATGCCGTCGCTCCCTGCAA 143060 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 ||||||| |||||||||||||| ||||| |||||| ||||| | | | | |||||| Sbjct 143059 AAAAAGCAAGGACGTGCTTGATGAAGTGCCGCTCGCCGTCGTTTAACTTCTCCCAGTCCT 143000 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| |||||||| || ||| || |||| Sbjct 142999 TCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGT 142940 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || | ||| | | ||||| ||| ||||| || || ||||| ||||| |||| Sbjct 142939 ACTTGCGCCAGATATCGTGGTATACGATCGGGAACAGCACGTAGCGGAACGGGTTATCGC 142880 Query 869931 GCAACAGGGGTTC 869943 || || ||||| Sbjct 142879 GCTGCAACGGTTC 142867 Score = 147 bits (162), Expect = 3e-29 Identities = 166/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| ||||| |||||||| | |||||||||| |||||| | |||||| | | Sbjct 143748 CTCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCT---G 143692 Query 868777 CGTC---TTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTC 868833 |||| ||||||||||| ||| || |||||| | ||||| ||||| || |||||||| Sbjct 143691 CGTCACGTTGTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCCGCCACAAACTC 143632 Query 868834 GATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCT 868893 ||||||||| |||| ||| | ||||||||||||| | | ||| ||||||| |||| Sbjct 143631 GATGTACTGCGACATCAGGTCCGCGTTCATGCCGACCAACCGCACAGGCAGCGCGTCGCA 143572 Query 868894 CACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 | ||||| ||| || | || || || |||||||||| Sbjct 143571 GATGAACTCGCGCTCAATGTTCACCGCGTCCACGATGATCT 143531 Score = 114 bits (126), Expect = 2e-19 Identities = 197/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||||| |||| || |||||||| || ||||||||| Sbjct 143456 CCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCGCTTC 143397 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || ||||| || |||||||| || ||||| ||| Sbjct 143396 TTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAATATGCCCTCAACCGCGGCGAAG 143337 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||| |||||||| ||| | || || |||| |||||| || ||||| Sbjct 143336 CCGATCAGCCGCTCCTGGAAGCTCGCGCGG--CTCC----CGATCCAACGCACAGCCCAC 143283 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 || ||||| ||| || |||| | ||| | ||| ||| | | || | ||| || Sbjct 143282 TCCGCCTTCTTCTGAACGCACGGGATCGTCTGGATTGCGTGCAGCAGCCGCAGCTTCTCC 143223 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | |||| ||| || ||||| | ||| | ||| || |||||| Sbjct 143222 TCGCTGTCCGTGATGTACGTGTCAAGCAGCACCGAGTACGTCTCC 143178 >seq221 Length=45055 Score = 102 bits (112), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 |||||| ||||||| ||| | || | | || ||||| | ||||||||||| || | Sbjct 18180 GGAGCGCCTCAAGGGTAAGTATGGACGTCTGCGTGGCAACTTGATGGGCAAGCGGGTTGA 18239 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 ||| |||||||| | ||||||| | ||||| | |||||| | |||||||| ||||| Sbjct 18240 CTTCTCCGCGCGCACGGTCATCACCGGTGACCCGAACATCGACGTCGACGAGGTCGGCGT 18299 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 || | | || | || |||||| || ||||||||||| |||| Sbjct 18300 TCCATTTTCCATAGCCATGACGCTGACGTTTCCCGAGCGGGTGA 18343 >seq7 Length=230934 Score = 100 bits (110), Expect = 3e-15 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||||||||||||| || | | ||||| Sbjct 199601 CGAGATGGACCCGTCGATGATCCTCGGCATCTGCGCGTCCATCATTCCCTATCCGAACCA 199660 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 732469 ||||||| | |||||||||| |||||| | || ||||| |||||| || || | || Sbjct 199661 CAACCAGTCCCCGCGCAACACCTACCAATCCGCTATGGGTAAGCAGGCCATGGGCATCTA 199720 Query 732470 GTCGCTCAACGCCGACCACGC-CATCGACACGGTGTCGCACGCCCTGTGCTACCCGCAGG 732528 | |||| | | || || ||| ||||| |||||| ||| | |||||||||| Sbjct 199721 CGCCTCCAACTTC-AACATGCGCATGGACACCACCGCGCACGTCCTCTTCTACCCGCAGA 199779 Query 732529 TGCCGCTGGTGC 732540 ||||||||||| Sbjct 199780 AGCCGCTGGTGC 199791 Score = 93.3 bits (102), Expect = 5e-13 Identities = 285/440 (65%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC--GAGGACATGCCCTGGT 733167 |||||||| || ||||||||| |||| | | ||| || ||||||||||||| | Sbjct 200322 CGCCACGGGCAGAAGGGCACCAACGGCAT--TCAGTTCCGCCAGGAGGACATGCCCT--T 200377 Query 733168 CGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCA 733227 | | || | ||||| | ||| ||| || | |||||||| || ||||| || || |||| Sbjct 200378 CAAC-CGTGACGGCGTCGTGCCGGACCTCATTATCAACCCCCATGCCATTCCCTCCCGCA 200436 Query 733228 TGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACA 733287 |||| ||| | | || ||||| | ||| ||||||||||||||| | ||||| Sbjct 200437 TGACGGTGGCCCACCTGATCGAGACGCTCGCAGGCAAGGTGGCCTGCTACAAGGGCGGTG 200496 Query 733288 TCGGCGACGGCACGCCCTTTGGCGGCGTCACCNNNNNNNNNNNNNNNNNNGAGTTGGCCC 733347 | | ||| ||||||||| || |||| | | || | Sbjct 200497 AGGTCTACGCCACGCCCTTCTGCTCCGTCGTGGTGGACGATTTCGGCAAGGCGCTGCACG 200556 Query 733348 GCCACGGGTGCGAGCGCTACGGCAAGGAGGTGCTCTACCACCCGCACACCGGCGAGCCCA 733407 || | || ||||||||||||| ||| |||||| || |||||||| || Sbjct 200557 CCCTCAAGTCGCAGCGCTACGGCAACGAGTGCCTCTACAACGGCCACACCGGTCTCCCGC 200616 Query 733408 TGGCGGCGTTGATCTTC-TCGGCGCCGGTCTACTACCAGGCCCTCCGGCACGTGGCCATC 733466 ||| | |||||| ||||| || || ||||||| |||| |||| || | Sbjct 200617 TGGACCACCTCATCTTCTTCGGC-CCCACCTTCTACCAGCGCCTCAAGCACTTGTCAGGG 200675 Query 733467 GACAAGATCCACGCGCGCCCGCGCGGTCCCGTGCAGATGCTCACCAAGCAGCCGGTCGAG 733526 || ||||| ||||| ||||| ||||| || ||||| ||| |||||| ||| Sbjct 200676 GATAAGATTCACGCCCGCCCACGCGGACCGCTGCAGCCGCTGGTGCGCCAGCCGACAGAG 200735 Query 733527 GGCCGCTCGCGCTCGGGCGG 733546 || ||| ||| | |||||| Sbjct 200736 GGTCGCGCGCACGAGGGCGG 200755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107039409345472