Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq24 156 7e-32 seq14 143 4e-28 seq7 114 2e-19 seq31 107 3e-17 seq221 98.7 2e-14 >seq24 Length=140537 Score = 156 bits (172), Expect = 7e-32 Identities = 198/272 (73%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 793871 CGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAA 793930 ||| | |||||| ||| | ||||| ||||| |||||| || || | |||||| Sbjct 575 CGTGCCCTCCGTGCTCA---TCACGCCAGCCTTCTGATACTCACCGACCTTCTTCTCGAA 519 Query 793931 AAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAG 793990 ||||| |||||||| | |||||||||| |||||| | |||||| | ||| Sbjct 518 GAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGCCACGTT 459 Query 793991 GTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTG 794050 ||||||||||||| ||| |||||| ||||||| ||||| || || || || |||||||| Sbjct 458 GTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCTGCCACAAACTCGATGTACTG 399 Query 794051 GCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTC 794110 |||| || | |||||||||||||| ||| ||| ||||||| |||| || ||||| Sbjct 398 CGACATCAGTTCAGCGTTCATGCCGATCAGCCGCACAGGCAGCGCGTCGCAGATGAACTC 339 Query 794111 TTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| || | || || || | |||||||| Sbjct 338 GCGCTCAATGTTCACTGCATCCACGATGATCT 307 Score = 89.7 bits (98), Expect = 8e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | |||||||| ||| || |||||||| || ||||||||| Sbjct 232 CCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCGCTTC 173 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || ||||| ||||| || || |||||||| || || || ||| Sbjct 172 TTCAGCCAGAACAGCGCGCAGAACGACCCCGAAAAGAATATGCCCTCTACCGCAGCGAAG 113 Query 794461 CCGACGAGCCGCTC 794474 |||| |||||||| Sbjct 112 CCGATCAGCCGCTC 99 >seq14 Length=160581 Score = 143 bits (158), Expect = 4e-28 Identities = 198/275 (72%), Gaps = 9/275 (3%) Strand=Plus/Minus Query 793871 CGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAA 793930 ||| | |||||| ||| | || || ||||| |||||| || || | |||||| Sbjct 143799 CGTGCCCTCCGTGCTCA---TCACACCAGCCTTCTGATACTCACCGACCTTCTTCTCGAA 143743 Query 793931 AAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAG 793990 ||||| |||||||| | |||||||||| |||||| | |||||| | ||||| Sbjct 143742 GAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTG---CGTCAC 143686 Query 793991 GT---AGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTA 794047 || ||||||||||| ||| |||||| ||||||| ||||| || || || || ||||| Sbjct 143685 GTTGTAGTGCTTCTCGAGCCCCAGCGACACAAGCAGCCGGTCCGCCACAAACTCGATGTA 143626 Query 794048 CTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAA 794107 ||| |||| ||| | ||||||||||||| | | ||| ||||||| |||| || || Sbjct 143625 CTGCGACATCAGGTCCGCGTTCATGCCGACCAACCGCACAGGCAGCGCGTCGCAGATGAA 143566 Query 794108 CTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| ||| || | || || || | |||||||| Sbjct 143565 CTCGCGCTCAATGTTCACCGCGTCCACGATGATCT 143531 Score = 125 bits (138), Expect = 1e-22 Identities = 222/324 (69%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | |||||||| ||| || |||||||| || ||||||||| Sbjct 143456 CCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCCGGGCATCAGCCCGCGCTTC 143397 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || ||||| || ||||| || |||||||| || ||||| ||| Sbjct 143396 TTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAATATGCCCTCAACCGCGGCGAAG 143337 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| |||||||| || | | ||| | | |||||| || |||||| Sbjct 143336 CCGATCAGCCGCTCCTGGAAGCTCGCGCGGCTCCC------GATCCAACGCACAGCCCAC 143283 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| ||| || | || | ||| | ||| ||| | | || | |||||| Sbjct 143282 TCCGCCTTCTTCTGAACGCACGGGATCGTCTGGATTGCGTGCAGCAGCCGCAGCTTCTCC 143223 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | |||| ||| ||| ||||| | || | |||||| ||||| ||||||||||| || Sbjct 143222 TCGCTGTCCGTGATGTACGTGTCAAGCAGCACCGAGTACGTCTCCGAGTGGATGTTCTCC 143163 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || | ||||||||| || ||| Sbjct 143162 ATCATCAACTGGAAGCCGTAGAAG 143139 Score = 114 bits (126), Expect = 2e-19 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || |||||||| ||||||||| Sbjct 143132 GCCTCCGGCACCTTCACGTCGGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATGCCG 143073 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||||| | || ||||| || |||||||||||||| ||||| |||||| ||||| | | | Sbjct 143072 TCGCTCCCTGCAAAAAAAGCAAGGACGTGCTTGATGAAGTGCCGCTCGCCGTCGTTTAAC 143013 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| ||| ||||||| |||||| ||||| | | || | Sbjct 143012 TTCTCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTC 142953 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| ||| |||||||| || |||| Sbjct 142952 TCCTGCTCCTTGTACTTGCGCCAGATATCGTGGTATACGATCGGGAACAGCACGTAGCGG 142893 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||||| ||||| ||| ||| || Sbjct 142892 AACGGGTTATCGCGCTGCAACGGTTC 142867 >seq7 Length=230934 Score = 114 bits (126), Expect = 2e-19 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| |||||| |||||||| |||| | | ||||| Sbjct 199601 CGAGATGGACCCGTCGATGATCCTCGGCATCTGCGCGTCCATCATTCCCTATCCGAACCA 199660 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| |||||| | || ||||| |||||| || || | || Sbjct 199661 CAACCAGTCCCCGCGCAACACCTACCAATCCGCTATGGGTAAGCAGGCCATGGGCATCTA 199720 Query 653014 GTCGCTCAACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAGG 653072 | |||| | | || || ||| |||||| |||||| ||||| |||||||||| Sbjct 199721 CGCCTCCAACTTC-AACATGCGCATGGACACCACCGCGCACGTCCTCTTCTACCCGCAGA 199779 Query 653073 TGCCGCTGGTGC 653084 ||||||||||| Sbjct 199780 AGCCGCTGGTGC 199791 >seq31 Length=128647 Score = 107 bits (118), Expect = 3e-17 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 2069604 GTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGAC 2069663 ||||||||| | || ||||| ||||| |||||| |||||||||| ||||| | Sbjct 108601 GTTGACCACCGGGAACTCGCCGCTCAGCACACGGCGCACGTAGATGTTGGACGTGAAGGG 108542 Query 2069664 CTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCAC 2069723 |||| | |||| ||||||| || |||||||| || | || || ||||| | |||| Sbjct 108541 CTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCTGTCGGCATCGGGGCCAG 108482 Query 2069724 GAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 || || |||||||||| ||| ||| |||| | || ||| |||||||||||| Sbjct 108481 CAGAAGGGAGTTGCGCATACCGGTCTGCATCACCTTCTCCTTGAGGCTGTCCCAGTCCCA 108422 Query 2069784 GCGGCCGCT 2069792 |||||| || Sbjct 108421 GCGGCCACT 108413 Score = 96.9 bits (106), Expect = 5e-14 Identities = 299/464 (64%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 2071552 GCTGTCTCCGTTGGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTG 2071611 || |||||| ||||| | ||| || | ||| || |||||||| | || | || Sbjct 108003 GCGGTCTCCTCCGGCGAGGTGTACTCAACTATCTCCGTACACAGGTTCGAGCACTTGATG 107944 Query 2071612 GTGCCCAGGTTCTGCTGGTTG--CTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669 ||||| ||||||| |||||| || | | |||| |||||||||| ||| ||| | | Sbjct 107943 GTGCCGAGGTTCTTCTGGTTCGACTTGCC--GTTGCACGCGTCCTTGTACAGGATGAACG 107886 Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCG 2071729 || | |||||||| ||||||| | || ||| || |||| | | |||| | | | Sbjct 107885 GCACGCCCGTCTCAATCTGCGACTCGAGGATAGCGAACCACACCTCCTGCGCCTGAATAG 107826 Query 2071730 AGGTCCTCGCG-CGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCG 2071788 | | ||| ||||||| | ||| || || | ||||| Sbjct 107825 TC-TGCACGCCACGGCCCTCCGCCTCGTAGCGCTCATATAGGCGCTCGAACTCCTCGCCG 107767 Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848 | ||| || || ||| || || |||| | |||| ||| | || | || Sbjct 107766 TAGCAGTCACTCAAGCCCGGACAGGCGTTCGGGTCCATCAGCGTCCACTTCCCTTCGCTC 107707 Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908 ||| || ||| ||||||||| ||||||| |||| || ||||| ||||| || Sbjct 107706 TTCACACGCTTCATGAACAGGTCGGGGACCCACAGGGCGTAGAACAGATCACGCGCACGC 107647 Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968 | || ||||||||| ||| |||||| || | | | || ||||||||||||| Sbjct 107646 TGGTCGTCCTTGCCGGTGTTGCGCTTCAGGAGCAGAAAACCAAAGATGTCGGCGTGCCAC 107587 Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||||| ||| || || ||||||||||| || || || Sbjct 107586 GGCTCCAGGTACACGGCGAAAGCACCCTTGCGCTTACCACCACC 107543 Score = 96.9 bits (106), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 2070050 CCGCCGCATGGTAGATCGTCTCAAAGATGGTGCGG-TTGAGGCGACGCGCGCCGGCGCTC 2070108 |||| ||| |||||||||||||||||| | || || | || |||| |||||||| Sbjct 108299 CCGCGGCAAAGTAGATCGTCTCAAAGATC-TCCGCATTCACCCGCTGCGCCTCGGCGCTC 108241 Query 2070109 TCCCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168 | | ||||| || || |||||||| |||||||||||||| |||| ||| || Sbjct 108240 ACAAAAGGCAGACGCAGCAGAATGAACGCGTCTGCCAGGCCCTGCACACCGAGGCCAATG 108181 Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228 || |||| ||||| ||| | | | ||| || ||||||| |||| ||||||| Sbjct 108180 GGGCGGTTGCGCATGTTGCTGCGAAGCGCCGTCTCAACGGGGTAGTAGTTGCGGTCGATC 108121 Query 2070229 ACGCGGTTGAGGTTG 2070243 || ||||| |||||| Sbjct 108120 ACACGGTTCAGGTTG 108106 >seq221 Length=45055 Score = 98.7 bits (108), Expect = 2e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| ||||||| ||| | || || | || ||||| | ||||||||||| || | Sbjct 18180 GGAGCGCCTCAAGGGTAAGTATGGACGTCTGCGTGGCAACTTGATGGGCAAGCGGGTTGA 18239 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 ||| | |||||| | ||||||| ||||| | |||||| | |||||||| ||||| Sbjct 18240 CTTCTCCGCGCGCACGGTCATCACCGGTGACCCGAACATCGACGTCGACGAGGTCGGCGT 18299 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 || | | || | || |||||| || ||||||||||| |||| Sbjct 18300 TCCATTTTCCATAGCCATGACGCTGACGTTTCCCGAGCGGGTGA 18343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916117048533824