Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq31 107 2e-18 seq53 93.3 5e-14 seq50 82.4 1e-10 seq29 82.4 1e-10 >seq31 Length=128647 Score = 107 bits (118), Expect = 2e-18 Identities = 517/807 (64%), Gaps = 29/807 (4%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || || ||||| ||| |||||||| | Sbjct 108033 GGTAGCGCGATGGAGGCAAGGTTGCACACGGCGGTCTCCTCCGGCGAGGTGTACTCAACT 107974 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| | ||| || | ||| || || || | ||||| ||||| ||| | Sbjct 107973 ATCTCCGTACACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCCG 107914 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 |||||||| |||||||| || ||| | ||| |||||||| |||| || | ||| ||| Sbjct 107913 TTGCACGCGTCCTTGTACAGGATGAACGGCACGCCCGTCTCAATCTGCGACTCGAGGATA 107854 Query 111410 GCCTTCCAAACATCG-GCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || || ||| ||| ||| | | ||| || |||||||||||||| Sbjct 107853 GCGAACCACACCTCCTGCGCCTG----AATAGTCTGCACGCCACGGCCCTCCGCCTCGTA 107798 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG--TGCCTTG 111523 || ||| || |||||||| || ||| | || || | | | Sbjct 107797 GCGCTCATATAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAAGCCCGGACAGGCGT- 107739 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 || || | | || | ||| | || | || || ||||||||||| ||||| || Sbjct 107738 TCGGGTC-CATCAGCGTCCACTTCCCTTCGCTCTTCACACGCTTCATGAACAGGTCGGGG 107680 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 | |||||||| | || ||||| || | | || |||| ||||| | || | Sbjct 107679 ACCCACAGGGCGTAGAACAGATC---ACGCGCACGCTGGTCGT--CCTTGCCGGTGTTGC 107625 Query 111644 AACTCA-----AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 ||| || || | | ||| || |||||||| ||||| || || || |||| || Sbjct 107624 GCTTCAGGAGCAGAAAACCAAAGATGTCGGCGTGCCACGGCTCCAGGTACACGGCGAAAG 107565 Query 111699 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 ||||| || || ||| | || | || ||||| || ||| ||| || || || | Sbjct 107564 CACCCTTGCGCTTACCACCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAACACACGCA 107505 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT-TATTGGCT 111814 |||| || | | || | || || || || || ||| || || | || Sbjct 107504 GCATCGGTACCAATCCGTTCGACGTGCCGTTCGTGCCGGCAAT-GTAGCTTCCAGCAGCG 107446 Query 111815 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTC 111873 | | || || | ||||| ||||| || || | || ||||| ||| |||||||| Sbjct 107445 CGGATATTGTGCACGTGCAGGCCAATGCCGCCCG-CCGCTTTGCTGATGACGGCACACTC 107387 Query 111874 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 111933 | | || || | || || |||| ||| ||| ||||| |||| | | |||||| Sbjct 107386 CTTCAGGGTGTCGTAAATGCCGTCGATGCTGTCGTCCTTCATGGCCACCAAGAAGCACGA 107327 Query 111934 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 111993 | ||||||||| | || || || || |||||||||||||| || ||||| |||| | Sbjct 107326 GCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTTGGCGTGGCGTGCGTGAAGAA 107267 Query 111994 ACCTTGGGACATCTTGTCGTATGTCTC 112020 || | |||||| ||||| ||||| Sbjct 107266 TCCCTTCGACATCAATTCGTACGTCTC 107240 >seq53 Length=102387 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 13205 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 13146 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 13145 CTGGTAGGAGC 13135 >seq50 Length=106123 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 11379 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 11320 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 11319 CAGGTAGGAG 11310 >seq29 Length=133705 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 29165 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 29106 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 29105 CAGGTAGGAG 29096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022453913600