Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq31 271 8e-68 seq208 89.7 6e-13 >seq31 Length=128647 Score = 271 bits (300), Expect = 8e-68 Identities = 508/728 (70%), Gaps = 24/728 (3%) Strand=Plus/Plus Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCT 53295 || || ||||||||||| || ||| | || | | ||| |||||||||||||||||||| Sbjct 107234 GTGCGCGAGACGTACGAATTGATGT-CGAAGGGATTCTTCACGCACGCCACGCCAACCCT 107292 Query 53296 GTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAA 53352 |||||||| || ||| | || |||||| |||| ||||| ||||||| ||||| Sbjct 107293 CTTCAACGCCGGCACGCCGAAGCCGCAGATG---AGCTCGTGCTTCTTGGTGGCCATGAA 107349 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| ||||||||||| ||||| || || |||||||||||| |||| ||| Sbjct 107350 GGACGACAGCATCGACGGCATTTACGACACCCTGAAGGAGTGTGCCGTCATCAGCAAAGC 107409 Query 53413 GTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGG 53471 | |||| || || || | ||| ||| | || |||| || || | || | Sbjct 107410 GGCGGGCGGCATTGGCCTGCACGTGCAC-AATATCCGCGCTGCTGGAAGCTACATTGCCG 107468 Query 53472 GGACGAACGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 | ||||||||| || ||| ||| | || || ||||| || || ||||||||||| ||| Sbjct 107469 GCACGAACGGCA-CGTCGAACGGATTGGTACCGATGCTGCGTGTGTTCAACAACACCGCC 107527 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || ||||| ||||||||||||| ||||||||||| | |||||| | ||||| |||||| Sbjct 107528 CGCTACGTGGACCAGGGTGGTGGTAAGCGCAAGGGTGCTTTCGCCGTGTACCTGGAGCCG 107587 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||||||||| | | ||||| ||| | || || | || || | Sbjct 107588 TGGCACGCCGACATCTTTGGTTTTCTGCTCCTGAAGCGCAACACCGGCAAGGACGACCAG 107647 Query 53651 CGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 || ||| ||||| ||||| ||| || |||||| | || ||||| |||||| | ||| Sbjct 107648 CG-TGCGCGTGATCTGTTCTAC-GCCCTGTGGGTCCCCGACCTGTTCATGAAGCGTGTGA 107705 Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-C 53767 ||| || | | ||||| |||||| |||||||| || |||| || || | | | Sbjct 107706 AGAGCGAAGGGAAGTGGACGCTGATGGACCCGAACGCCTG-TCCGGGCTTGAGTGACTGC 107764 Query 53768 TACGGTGAGGAGTTTAACGAG---ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAG 53824 ||||| |||||||| |||| | ||| | |||| | ||||||| | | Sbjct 107765 TACGGCGAGGAGTT---CGAGCGCCTATATGAGCGCTACGAGGCGGAGGGCCGTGGCGTG 107821 Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884 ||| | |||||| ||||| ||| || |||||| || ||| | |||||||| Sbjct 107822 CAGACTATTCAGGCGCAGGAGGTGTGGTTCGCTATCCTCGAGTCGCAGATTGAGACGGGC 107881 Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 ||||| ||| |||||||| || ||||| ||| |||||||||||| ||||| Sbjct 107882 GTGCCGTTCATCCTGTACAAGGACGCGTGCAACGGCAAGTCGAACCAGAAGAACCTCGGC 107941 Query 53945 GTCATCAA 53952 |||||| Sbjct 107942 ACCATCAA 107949 Score = 134 bits (148), Expect = 2e-26 Identities = 303/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||||| || |||| || ||||| || ||||| || | ||||| | |||||| Sbjct 108467 CGCAACTCCCTTCTGCTGGCCCCGATGCCGACAGCGTCCACCTCGCAGATTCTCGGCAAC 108526 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGCAGGTGA 55602 |||||| |||||||| | |||| ||||||||||| ||||||| | | ||| || || Sbjct 108527 AACGAGTGCTTCGAGCCCTTCACGTCCAACATCTACGTGCGCCGTGTGCTGAGC-GGCGA 108585 Query 55603 GTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCC 55662 ||| || |||||||| | ||||| | |||||| ||| | ||||||| Sbjct 108586 GTTCCCGGTGGTCAACAAGTATCTCGTGATGGACCTCATCAAGCGCGGACTGTGGAACGA 108645 Query 55663 GCAGAT---CAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA---GAT 55716 | ||| ||| |||| | ||| ||||| || | | | || || Sbjct 108646 GACGATGCGCAATGAAATTATTACCCTAAAC---GGGTCTATCTTGTCTATCGACGGCAT 108702 Query 55717 TCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 || | || |||||| | ||||| || ||||||||||| || ||| | ||||| Sbjct 108703 CCCCCAAGACCTTAAGGAGCTCTACCGCACCGTGTGGGAGATCCCTCAGCGCAAGCTGAT 108762 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 |||||| || || ||| |||||| ||||| || ||||| |||||| | ||| | Sbjct 108763 CGACATGGCCCGCGACCGCGGTCAGTACATTGACCAATCGCAGTCGCTGAACCTGTTCCT 108822 Query 55837 GGAGAA-TCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895 | |||| || | |||||| || | | ||||||| || ||| ||| || || | Sbjct 108823 GCAGAACCCCACCTCTGGCC-AGATCACGTCGATGCTTTTCTACACCTGGGAGTGTGGCC 108881 Query 55896 TCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||| ||| ||||||| ||||| || Sbjct 108882 TCAAGACCGGTGTGTACTACCTGCGCAC 108909 >seq208 Length=48303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||| ||||||||| | ||||| | ||||| || |||||||||||||||||| || || Sbjct 27221 CAGGTTCGGCCAGAAGCAGTGGATGAAGTTGATGAGCAAGCCCTTGATGTGCGACCCATC 27280 Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAG 152843 ||||| |||| ||||||||| ||| | ||||||||||| Sbjct 27281 GTGATCCTGATCGGACATGATCATAAGATGCCCGTAGCGCAG 27322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207682316800