Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq176 122 7e-23 seq7 93.3 3e-14 >seq176 Length=55057 Score = 122 bits (134), Expect = 7e-23 Identities = 397/602 (66%), Gaps = 26/602 (4%) Strand=Plus/Plus Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 ||||||| || || | || |||||||||||| || ||||| |||| || | || Sbjct 8104 TTCAGCGCCTCGACATGATTTCTGTAGACGTGAGCATCGCCCAGCGTGTGCACCAGTTCA 8163 Query 29933 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGAT 29991 ||||| || || || | | || |||| ||| ||| | ||| ||||| |||||| Sbjct 8164 CCCGGACGCAGGCCCGTCGCCTTCGCAATCA-GTATCGTCAAGAGGGAGTACGAGGCGAT 8222 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 ||| ||||| || || || |||||||| | ||| | |||||| ||| || |||||||| Sbjct 8223 GTTGAAGGGCACGCCAAGGCCCATGTCACACGAGCGCTGGTACAGCATGCATGAGAGCTC 8282 Query 30052 -------TCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104 ||||| | ||||||| ||||| | || |||||| || || || ||||| Sbjct 8283 CGACTTTTCCGT-GTTCACGTAGAACTGGCCCAGTAAGTGGCAAGGGGGCAGCGCCATCT 8341 Query 30105 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30164 | || | |||||||| ||| | || || || | ||| | ||| || ||| Sbjct 8342 TGGACAGCGCGGACGGGTTCCACGCGATGAAGAGCATCCGACGGTCGTTTGGATT-TTCT 8400 Query 30165 TGATGAG---GTCCACG-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC- 30219 | |||| || |||| | | ||| | ||||||||| ||| || ||| | || Sbjct 8401 T--TGAGCGTGTTCACGATCATCTTG-ATCTGATCCACGCCCTCACCTTCGTAATTCGCG 8457 Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279 | || | || ||||||| || || || || | ||||||||| ||||| || || ||||| Sbjct 8458 TCGCA-GCCCTTGTACTCCGCGCCAAAGTGGCGCCACTGGAAGCCGTAGACTGGGCCCAG 8516 Query 30280 GTCTCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30336 | ||| || ||| ||| ||| || || | |||| | || || | || ||||| Sbjct 8517 G--TCCATC-TCCTTGTTCTCCGTGAGCCCGCGGCTGTCAAGGAACTCGCGCGAGCCGTT 8573 Query 30337 GGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30396 | | |||||||| | | |||| || | || | || ||| || || | | Sbjct 8574 GCCATCCCAGATGTGAATGTCCTTGTCGGCCAGGAGCTGGGCGTTCGTCTCACCACGCAG 8633 Query 30397 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||||| | ||||||||| ||| | ||| || || | |||||||| || || || Sbjct 8634 GAACCATATCAGCTCCTCACAGACACCACGCCAGAACACACGTTTGGTCGTAAGCAGCGG 8693 Query 30457 AA 30458 || Sbjct 8694 AA 8695 >seq7 Length=230934 Score = 93.3 bits (102), Expect = 3e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 52826 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52885 ||||||||||||||||||| || ||||| || ||||| |||||||| ||||||||||| Sbjct 200360 CCAGGAGGACATGCCCTTCAACCGTGACGGCGTCGTGCCGGACCTCATTATCAACCCCCA 200419 Query 52886 CGCCTTTCCCTCCAGGATGACCGT 52909 ||| |||||||| | ||||| || Sbjct 200420 TGCCATTCCCTCCCGCATGACGGT 200443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406304378479872