Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq176 150 2e-31 >seq176 Length=55057 Score = 150 bits (166), Expect = 2e-31 Identities = 382/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Plus Query 6562 GTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATG 6621 ||||| || ||||| |||| ||| |||||||| || || ||| || ||| | | Sbjct 8127 GTAGACGTGAGCATCGCCCAGCGTGTGCACCAGTTCACCCGGACGCAGGCCCGTCGCCTT 8186 Query 6622 AGCGATCATGTA-CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCA 6680 || |||| ||| ||| | || | ||| || |||||||| ||||| || | |||| Sbjct 8187 CGCAATCA-GTATCGTCAAGAGGGAGTACGAGGCGATGTTGAAGGGCACGCCAAGGCCCA 8245 Query 6681 TGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT---CGCG---ACGTAGA 6734 |||| | ||| || || || ||| ||| || |||||| || || | ||||||| Sbjct 8246 TGTCACACGAGCGCTGGTACAGCATGCATGAGAGCTCCGACTTTTCCGTGTTCACGTAGA 8305 Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACG 6794 | |||| || |||||| ||||| ||||||||| | || | ||||||||||| Sbjct 8306 ACTGGCCCAGTAAGTGGCAAGGGGGCAGCGCCATCTTGGACAGCGCGGACGGGTTCCACG 8365 Query 6795 CGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGT---CGATCACGTACT 6851 || | | |||| | ||| | || || || | |||| |||||| || Sbjct 8366 CGATGAAGAGCATCCGACGGTCGTTTGGATTTTCTTTGAGCGTGTTCACGATCA---TCT 8422 Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 | ||| ||| | |||| || || | ||| |||| ||| |||||||| |||| Sbjct 8423 TGATCTGATCCACGCCCTCACCTTCGTAATTCGCGTCGCAGCCCTTGTACTCCGCGCCAA 8482 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 |||| | ||||||||| |||||||| ||||||| ||| ||||| | || || Sbjct 8483 AGTGGCGCCACTGGAAGCCGTAGACTGGGCCCAGGTCCATCTCCTTGTTCTCCGTGAGCC 8542 Query 6972 CCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031 | || |||| || || || || || |||| | |||||||| | | || | | Sbjct 8543 CGCGGCTGTCAAGGAACTCGCGCGAGCCGTTGCCATCCCAGATGTGAATGTCCTTGTCGG 8602 Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091 || || || |||||| | || | || |||||| | ||||||||| || || Sbjct 8603 CCAGGAGCTGGGCGTTCGTCTCACCACGCAGGAACCATATCAGCTCCTCACAGACACCAC 8662 Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATT 7127 |||| |||||||||| ||||| |||||||||| || Sbjct 8663 GCCAGAACACACGTTTGGTCGTAAGCAGCGGAAGTT 8698 Score = 150 bits (166), Expect = 2e-31 Identities = 382/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 34218 AATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGT 34277 || |||||||||| ||||| |||||||||| |||| || || ||||||||| | | Sbjct 8698 AACTTCCGCTGCTTACGACCAAACGTGTGTTCTGGCGTGGTGTCTGTGAGGAGCTGATAT 8639 Query 34278 GGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGG 34337 ||||| || | || | |||||| || || || | | || | | ||||||| Sbjct 8638 GGTTCCTGCGTGGTGAGACGAACGCCCAGCTCCTGGCCGACAAGGACATTCACATCTGGG 8579 Query 34338 ACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCG 34397 | | |||| || || || || || |||| || ||| || | ||||| | Sbjct 8578 ATGGCAACGGCTCGCGCGAGTTCCTTGACAGCCGCGGGCTCACGGAGAACAAGGAGATGG 8519 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 || ||||||| |||||||| ||||||||| | |||||||| |||||||| ||| ||| Sbjct 8518 ACCTGGGCCCAGTCTACGGCTTCCAGTGGCGCCACTTTGGCGCGGAGTACAAGGGCTGCG 8459 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG---ACACCTTGA 34514 | ||| | || || |||| | ||| ||| | || |||||| |||| | | Sbjct 8458 ACGCGAATTACGAAGGTGAGGGCGTGGATCAGATCAAGA---TGATCGTGAACACGCTCA 8402 Query 34515 AGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTC 34574 | || || | ||| | |||| | | ||||||||||||| | || | Sbjct 8401 AAGAAAATCCAAACGACCGTCGGATGCTCTTCATCGCGTGGAACCCGTCCGCGCTGTCCA 8342 Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT---CGCG---AATGGGG 34628 ||||||||| ||||| |||||| || |||| |||||||| | || || || Sbjct 8341 AGATGGCGCTGCCCCCTTGCCACTTACTGGGCCAGTTCTACGTGAACACGGAAAAGTCGG 8282 Query 34629 AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA 34688 |||| || ||| ||| || || || ||| | |||||||| | || ||||| ||||||| Sbjct 8281 AGCTCTCATGCATGCTGTACCAGCGCTCGTGTGACATGGGCCTTGGCGTGCCCTTCAACA 8222 Query 34689 TTGCTAGTTACGCTCTGCTCACG-TACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 | || ||| | || | ||| ||| |||| || | | ||| || ||| || Sbjct 8221 TCGCCTCGTACTCCCTCTTGACGATAC-TGATTGCGAAGGCGACGGGCCTGCGTCCGGGT 8163 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTAC 34783 || |||||||| ||| |||| ||||| || ||||| Sbjct 8162 GAACTGGTGCACACGCTGGGCGATGCTCACGTCTAC 8127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255586411520