Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq176 113 3e-20 seq7 93.3 3e-14 >seq176 Length=55057 Score = 113 bits (124), Expect = 3e-20 Identities = 395/602 (66%), Gaps = 26/602 (4%) Strand=Plus/Plus Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198 ||||||| || || |||| |||||||||||| || ||||| ||||| || | || Sbjct 8104 TTCAGCGCCTCGACATGATTTCTGTAGACGTGAGCATCGCCCAGCGTGTGCACCAGTTCA 8163 Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGAT 27257 ||||| || || || | | || |||| ||| ||| | ||| ||||| |||||| Sbjct 8164 CCCGGACGCAGGCCCGTCGCCTTCGCAATCA-GTATCGTCAAGAGGGAGTACGAGGCGAT 8222 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 27317 ||| ||||| || || || |||||||| | ||| | |||||| ||| || |||||||| Sbjct 8223 GTTGAAGGGCACGCCAAGGCCCATGTCACACGAGCGCTGGTACAGCATGCATGAGAGCTC 8282 Query 27318 -------TCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 ||| | | | ||||| ||||| | | |||||| || || || ||||| Sbjct 8283 CGACTTTTCCGT-GTTCACGTAGAACTGGCCCAGTAAGTGGCAAGGGGGCAGCGCCATCT 8341 Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430 | || | |||||||| ||| | || || || | ||| | ||| || ||| Sbjct 8342 TGGACAGCGCGGACGGGTTCCACGCGATGAAGAGCATCCGACGGTCGTTTGGATT-TTCT 8400 Query 27431 TGATGAG---GTCCACG-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACC 27486 | |||| || |||| | | ||| | ||||||||| ||| || ||| | | | Sbjct 8401 T--TGAGCGTGTTCACGATCATCTTG-ATCTGATCCACGCCCTCACCTTCGTAAT-TCGC 8456 Query 27487 CTC-ATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAG 27545 || | || ||||||| || || || || | ||| ||||| ||||| || || ||||| Sbjct 8457 GTCGCAGCCCTTGTACTCCGCGCCAAAGTGGCGCCACTGGAAGCCGTAGACTGGGCCCAG 8516 Query 27546 GTCTCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 27602 | ||| || ||| ||| ||| || || | |||| | || || | || ||||| Sbjct 8517 G--TCCATC-TCCTTGTTCTCCGTGAGCCCGCGGCTGTCAAGGAACTCGCGCGAGCCGTT 8573 Query 27603 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 27662 | | |||||||| | | |||| |||| || | || ||| || || | | Sbjct 8574 GCCATCCCAGATGTGAATGTCCTTGTCGGCCAGGAGCTGGGCGTTCGTCTCACCACGCAG 8633 Query 27663 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 |||||| | ||||||||| ||| | ||| || || | |||||||| || || || Sbjct 8634 GAACCATATCAGCTCCTCACAGACACCACGCCAGAACACACGTTTGGTCGTAAGCAGCGG 8693 Query 27723 AA 27724 || Sbjct 8694 AA 8695 >seq7 Length=230934 Score = 93.3 bits (102), Expect = 3e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 48606 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 48665 ||||||||||||||||||| || ||||| || ||||| |||||||| ||||||||||| Sbjct 200360 CCAGGAGGACATGCCCTTCAACCGTGACGGCGTCGTGCCGGACCTCATTATCAACCCCCA 200419 Query 48666 CGCCTTTCCCTCCAGGATGACCGT 48689 ||| |||||||| | ||||| || Sbjct 200420 TGCCATTCCCTCCCGCATGACGGT 200443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369501723903296