Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1046 188 8e-43 >seq1046 Length=41433 Score = 188 bits (208), Expect = 8e-43 Identities = 410/607 (68%), Gaps = 20/607 (3%) Strand=Plus/Plus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| |||||| | |||||| || || ||||||||| ||||| || || ||| Sbjct 4510 CAGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTG 4569 Query 145731 GATGAAGTCCCCGGGCTCG-AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGT 145789 | | || || || ||| || || || | |||| || |||||||| || | Sbjct 4570 CACCAGCTCACCCGG-TCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAAT 4628 Query 145790 AGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGC 145849 | ||| ||||| || ||||| || || |||||||| | ||||||||||||||| || Sbjct 4629 ACGAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAGGAGCGCTGGTACAGCATGC 4688 Query 145850 AGGAGAGCTCCC-CGCCCGC-----CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCA 145903 | || ||||| || | |||||||||||||| || |||||||||||||||| Sbjct 4689 ACGACAGCTCTTTCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCA 4748 Query 145904 GGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG- 145962 ||||||| | || | ||||||||| ||||||| || || ||| || ||| Sbjct 4749 GGGCCATCTGGTTCAACGCGCACGGGTTCCACGCGGTGAAGA---GCATCCGGCGGTCGT 4805 Query 145963 --GGGTTCCTCTTGA---TCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCC 146017 |||||| | ||| ||||| | ||| | ||| ||| |||||||| | || Sbjct 4806 TTGGGTTCGCCCTGAGCGTCTCCACAATCGACT---TGATCTGATCCACGCCTTCTCCGT 4862 Query 146018 GGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGA 146077 ||| | || | | || || ||||||||| |||||||| | ||||||||| ||||||| Sbjct 4863 CGTAGTTTGCGTCGCAGCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGA 4922 Query 146078 CGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGG 146137 |||| || |||||| || | | | || ||| | | ||||||| | || | Sbjct 4923 CGGGGCCGAGGTCCATTTCCTTGTTTTCCGTCAAACCGCGGCTGTCGAGGAACGCGCGTG 4982 Query 146138 ACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACC 146197 | ||||| ||||||| || | | | || | | | ||| | | || ||| || Sbjct 4983 AGGCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCC 5042 Query 146198 CCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCA 146257 | | | |||||| |||||||| || || || | ||||||||| | ||| || |||| Sbjct 5043 CACGCAAGAACCACAGCAGCTCCTCACACACGCCACGCCAGAAGACACGCTTCGTCGTCA 5102 Query 146258 GCAGGGG 146264 ||||||| Sbjct 5103 GCAGGGG 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590056139936040