Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2647 127 2e-24 seq2641 127 2e-24 seq2270 127 2e-24 seq2203 122 1e-22 seq102 89.7 6e-13 seq2634 86.0 7e-12 seq2566 86.0 7e-12 >seq2647 Length=59499 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||| || || ||||| || || || || || | Sbjct 6425 CGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 6366 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| |||||||| || || ||||||||||| | ||| | || ||||||| Sbjct 6365 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 6306 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 6305 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 6246 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 6245 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 6211 >seq2641 Length=10753 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| || |||||| || || ||||| || || || || || | Sbjct 8067 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 8126 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 8127 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 8186 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 8187 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 8246 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 8247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8281 >seq2270 Length=72018 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||| |||||| || || ||||| || || || || || | Sbjct 71747 CGCAGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 71806 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 71807 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 71866 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 71867 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 71926 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 71927 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 71961 >seq2203 Length=74467 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||| || || ||||| || || || || || | Sbjct 71 CGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 130 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 131 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 190 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 191 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 250 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 251 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 285 >seq102 Length=54053 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 4181 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 4122 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 4121 CCGAGAACTGAA 4110 >seq2634 Length=10972 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 3612 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 3553 Query 60131 CCGAG 60135 ||||| Sbjct 3552 CCGAG 3548 >seq2566 Length=12111 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 7973 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 7914 Query 60131 CCGAG 60135 ||||| Sbjct 7913 CCGAG 7909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571797579236280