Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2433 122 2e-22 seq1191 122 2e-22 >seq2433 Length=14949 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 263 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 321 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 322 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 379 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 380 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 438 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 439 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 496 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 497 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 556 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 557 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 613 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 614 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 670 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 671 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 726 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 727 GCTCGCTCCGCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 786 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 787 CGTCTGGAT 795 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 3392 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 3450 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 3451 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 3508 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 3509 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 3567 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 3568 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 3625 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 3626 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 3685 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 3686 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 3742 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 3743 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 3799 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 3800 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 3855 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 3856 GCTCGCTCCGCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 3915 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 3916 CGTCTGGAT 3924 >seq1191 Length=39656 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 28338 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 28396 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 28397 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 28454 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 28455 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 28513 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 28514 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 28571 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 28572 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 28631 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 28632 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 28688 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 28689 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 28745 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 28746 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 28801 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 28802 GCTCGCTCCGCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 28861 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 28862 CGTCTGGAT 28870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073727864872768