Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1046 149 5e-31 >seq1046 Length=41433 Score = 149 bits (164), Expect = 5e-31 Identities = 383/573 (67%), Gaps = 28/573 (5%) Strand=Plus/Plus Query 20776 CTCAAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGAT 20835 ||||||||||||||||||||| || | || | || | ||| || | | || | Sbjct 4374 CTCAAACGGCCATCTCCATCTTGATAGGCGGGTACGGAACATAGTCCACCACCTCCATGT 4433 Query 20836 CCG-CG-CGCGTAAAGTCCTCCAG--ACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGA 20891 ||| || | ||||| |||||||| | ||| | |||| || | |||| |||| Sbjct 4434 CCGTCGACTCGTAA--TCCTCCAGGAAGTCGCGCTCCTTCTTGAA--CACCAGCACCGGA 4489 Query 20892 AACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACG 20951 |||| |||||| | ||||||||| | ||| | || || || || |||| ||| Sbjct 4490 AACGCACGCGGCACACGCCGCAGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACG 4549 Query 20952 TGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATC 21011 || |||||||| | |||||||| | || ||||| ||| || || | | |||||| Sbjct 4550 TGTGCGTCACCGAGTGTGTGCACCAGCTCACCCGGTCGCAGACCTGTCGCCTTCGCGATC 4609 Query 21012 AGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCG 21071 | | |||||| || | || ||| ||||||||||| || ||||||||||||||| | Sbjct 4610 AAAATCGTCAGCAGCGAATACGAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAG 4669 Query 21072 GACCTCTGGTACAGCTGGCAGGACAGCTC---CCCCCGAG---CCACGTAAAACTGACAC 21125 || | |||||||||| ||| |||||||| | | | |||||| ||||| | Sbjct 4670 GAGCGCTGGTACAGCATGCACGACAGCTCTTTCGTTTGTGTGTTCACGTAGAACTGGCCA 4729 Query 21126 AAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC--CGCG---GGGTTCCACGCGC 21180 | | ||| || || || || |||||| | | || |||| |||||||||||| Sbjct 4730 AGTAGGTGGCAGGGCGGCAGGGCCATCTG-----GTTCAACGCGCACGGGTTCCACGCGG 4784 Query 21181 ACATAACGATGCGCCGATCG--TGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 | | || || || ||| |||| |||| | | ||||| | | | Sbjct 4785 TGAAGAGCATCCGGCGGTCGTTTGGGTTCGCC--CTGAGCGTCTCCACAATCGACTTGAT 4842 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||| ||||| || | || |||||||| |||||| ||||||||| | || || || || Sbjct 4843 CTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCGCAGCCCCTGTACGCGGCGCCGAAGTG 4902 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | ||||||||| ||||| || || || || || Sbjct 4903 ACGCCACTGGAAGCCGTAGACGGGGCCGAGGTC 4935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427761396930480