Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2433 111 2e-19 seq1191 111 2e-19 seq463 84.2 2e-11 >seq2433 Length=14949 Score = 111 bits (122), Expect = 2e-19 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 633 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 574 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50619 |||||||| || ||||| |||| | | || | || | | ||| | || Sbjct 573 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 514 Query 50620 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50679 || || || ||| || || ||||||| ||||| || ||||| | || ||| Sbjct 513 GAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 454 Query 50680 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50738 | || | ||||||||||| ||| ||||| ||| ||||||| ||||| || || ||| | Sbjct 453 CGACTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 395 Query 50739 ATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTT 50796 || |||| | |||||| | ||| |||| || | ||| | || || || Sbjct 394 GCTGCTTGTATC-GCTGGGGCTGGAGAAGCACTACAACGTGACG-CAGCCGTTCGACTTC 337 Query 50797 ATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATA 50855 ||| | | || ||| || ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 336 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGAGTA 278 Score = 111 bits (122), Expect = 2e-19 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 3762 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 3703 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50619 |||||||| || ||||| |||| | | || | || | | ||| | || Sbjct 3702 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 3643 Query 50620 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50679 || || || ||| || || ||||||| ||||| || ||||| | || ||| Sbjct 3642 GAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 3583 Query 50680 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50738 | || | ||||||||||| ||| ||||| ||| ||||||| ||||| || || ||| | Sbjct 3582 CGACTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 3524 Query 50739 ATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTT 50796 || |||| | |||||| | ||| |||| || | ||| | || || || Sbjct 3523 GCTGCTTGTATC-GCTGGGGCTGGAGAAGCACTACAACGTGACG-CAGCCGTTCGACTTC 3466 Query 50797 ATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATA 50855 ||| | | || ||| || ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 3465 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGAGTA 3407 >seq1191 Length=39656 Score = 111 bits (122), Expect = 2e-19 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 28708 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 28649 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50619 |||||||| || ||||| |||| | | || | || | | ||| | || Sbjct 28648 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 28589 Query 50620 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50679 || || || ||| || || ||||||| ||||| || ||||| | || ||| Sbjct 28588 GAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 28529 Query 50680 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50738 | || | ||||||||||| ||| ||||| ||| ||||||| ||||| || || ||| | Sbjct 28528 CGACTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 28470 Query 50739 ATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTT 50796 || |||| | |||||| | ||| |||| || | ||| | || || || Sbjct 28469 GCTGCTTGTATC-GCTGGGGCTGGAGAAGCACTACAACGTGACG-CAGCCGTTCGACTTC 28412 Query 50797 ATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATA 50855 ||| | | || ||| || ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 28411 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGAGTA 28353 >seq463 Length=3795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 219/331 (66%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 157481 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCT 157537 |||||| |||||||| |||| |||||| || ||| || || ||||| ||| || Sbjct 1027 ATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 968 Query 157538 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 157597 || ||||||| || | | || || || || || ||||| || | ||| || | | Sbjct 967 TGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCCCATTCGAC 908 Query 157598 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCA 157657 ||||||||||| || | |||| | | ||| | | ||| ||||| || ||| Sbjct 907 GTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCA 848 Query 157658 ATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGA 157717 || |||||| | || ||| | ||||| || || | || | || |||||| Sbjct 847 ATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTAAATGCCGTCG 788 Query 157718 ATGCTATCG-CTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGAGTCAGACTGCC 157776 ||||| ||| | ||| | || | | || || || ||||||||||| || | |||| Sbjct 787 ATGCTGTCGTCCTTCGA-GGCGACCAAGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCC 729 Query 157777 GGCAGCGAACATGGTTGGGCTTGCGTGCGTG 157807 ||| ||| | ||| ||| | ||||||||| Sbjct 728 GGCGTTGAAGAGGGTCGGGGTGGCGTGCGTG 698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506996648158320