Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2433 143 4e-29 seq1191 143 4e-29 seq463 125 1e-23 >seq2433 Length=14949 Score = 143 bits (158), Expect = 4e-29 Identities = 575/884 (65%), Gaps = 30/884 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 1140 CTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 1081 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 1080 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGC---TGAAC 1024 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | | |||||||| || ||| ||| || ||| Sbjct 1023 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATC 964 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| | || |||| | || || Sbjct 963 GTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 905 Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 |||||||| ||||| | ||||| |||||| | ||||| || | |||||| ||| | Sbjct 904 GTTTTACGGGTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCT 845 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 844 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 786 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | |||||||| | || | || | Sbjct 785 TCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGGCAGCGGAGCGAG-C 727 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 ||| || | ||| | | ||||| || || |||||||||||||| ||||| | Sbjct 726 TTCCAG----GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTC 671 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| | Sbjct 670 GTTCTGCGCTC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCA 612 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| |||||||| || |||| || Sbjct 611 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 552 Query 125590 ACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | | | || ||| | | |||| | || || ||| ||| || Sbjct 551 CGCACATCAAGCACAAGCTGCCGCGCGAGCG-CGTGCTGGAGAT---CATCGTA---GAC 499 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || |||| || || | ||||| | ||| | || ||||| | |||| |||||| Sbjct 498 GCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATG 439 Query 125709 AACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTA-CGAG 125765 ||| | || ||| ||| ||||||| ||||| ||||| || || || | |||| || Sbjct 438 AACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT 380 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | ||| ||| ||||||| | | | || || || |||||| | || || Sbjct 379 GGGGCTGG--AGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCG 322 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||| ||||| |||||||||||||| ||||||| Sbjct 321 CTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 278 Score = 143 bits (158), Expect = 4e-29 Identities = 575/884 (65%), Gaps = 30/884 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 4269 CTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 4210 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 4209 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGC---TGAAC 4153 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | | |||||||| || ||| ||| || ||| Sbjct 4152 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATC 4093 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| | || |||| | || || Sbjct 4092 GTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 4034 Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 |||||||| ||||| | ||||| |||||| | ||||| || | |||||| ||| | Sbjct 4033 GTTTTACGGGTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCT 3974 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 3973 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 3915 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | |||||||| | || | || | Sbjct 3914 TCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGGCAGCGGAGCGAG-C 3856 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 ||| || | ||| | | ||||| || || |||||||||||||| ||||| | Sbjct 3855 TTCCAG----GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTC 3800 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| | Sbjct 3799 GTTCTGCGCTC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCA 3741 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| |||||||| || |||| || Sbjct 3740 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 3681 Query 125590 ACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | | | || ||| | | |||| | || || ||| ||| || Sbjct 3680 CGCACATCAAGCACAAGCTGCCGCGCGAGCG-CGTGCTGGAGAT---CATCGTA---GAC 3628 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || |||| || || | ||||| | ||| | || ||||| | |||| |||||| Sbjct 3627 GCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATG 3568 Query 125709 AACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTA-CGAG 125765 ||| | || ||| ||| ||||||| ||||| ||||| || || || | |||| || Sbjct 3567 AACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT 3509 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | ||| ||| ||||||| | | | || || || |||||| | || || Sbjct 3508 GGGGCTGG--AGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCG 3451 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||| ||||| |||||||||||||| ||||||| Sbjct 3450 CTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 3407 >seq1191 Length=39656 Score = 143 bits (158), Expect = 4e-29 Identities = 575/884 (65%), Gaps = 30/884 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 29215 CTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 29156 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 29155 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGC---TGAAC 29099 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | | |||||||| || ||| ||| || ||| Sbjct 29098 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATC 29039 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| | || |||| | || || Sbjct 29038 GTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 28980 Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 |||||||| ||||| | ||||| |||||| | ||||| || | |||||| ||| | Sbjct 28979 GTTTTACGGGTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCT 28920 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 28919 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 28861 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | |||||||| | || | || | Sbjct 28860 TCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGGCAGCGGAGCGAG-C 28802 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 ||| || | ||| | | ||||| || || |||||||||||||| ||||| | Sbjct 28801 TTCCAG----GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTC 28746 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| | Sbjct 28745 GTTCTGCGCTC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCA 28687 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| |||||||| || |||| || Sbjct 28686 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 28627 Query 125590 ACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | | | || ||| | | |||| | || || ||| ||| || Sbjct 28626 CGCACATCAAGCACAAGCTGCCGCGCGAGCG-CGTGCTGGAGAT---CATCGTA---GAC 28574 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || |||| || || | ||||| | ||| | || ||||| | |||| |||||| Sbjct 28573 GCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATG 28514 Query 125709 AACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTA-CGAG 125765 ||| | || ||| ||| ||||||| ||||| ||||| || || || | |||| || Sbjct 28513 AACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT 28455 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | ||| ||| ||||||| | | | || || || |||||| | || || Sbjct 28454 GGGGCTGG--AGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCG 28397 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||| ||||| |||||||||||||| ||||||| Sbjct 28396 CTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 28353 >seq463 Length=3795 Score = 125 bits (138), Expect = 1e-23 Identities = 377/570 (66%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | ||| || ||||| ||||| | | | ||| || || | || Sbjct 897 ACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCC-CG 955 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| ||| || ||||| | ||||| ||| | || || || Sbjct 956 CTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTG 1015 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGC 96982 |||||| ||| | || | ||| | | || ||||| | | ||| || || Sbjct 1016 GCACGCCGACATCTTCGGCTTCTTGCTGCTGAAGCGCAACACC---GGCAAGGACGACCA 1072 Query 96983 ACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA 97042 || ||| | ||| | ||||| || | ||| | ||||| ||||||||||||| || || Sbjct 1073 GCGCGCCCGTGACCTCTTTTACGCGTTGTGGATCCCAGACCTGTTCATGAAGCGTGTGAA 1132 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGA-CTCGTCACCCGGTCTGTCCGATTGCT 97101 || ||| | |||| || ||| | |||| | | | || || ||| ||| |||| Sbjct 1133 GAGCGAGGGCAAGTGGACGCTGATG-GATCCGAGCACATGCCCGGGGCTGAGCGACTGCT 1191 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGA 97160 ||||| |||||||| | |||| | ||||||| | || ||||| |||| ||| Sbjct 1192 ACGGCGAGGAGTTTGAACGCCTGTACGAGCGCTACGAGAAGGAAGGCCGCGGCGTGCAGA 1251 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 ||| || | || | || ||||| || ||| | | | ||| | ||||| || Sbjct 1252 CGA-TCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCACAGATCGAGACGGGCGTG 1310 Query 97221 CCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| |||||||||||| |||| || |||| ||||| || | ||||| Sbjct 1311 CCTTTCATCCTCTACAAGGAT-GCGTGCAACAGCAAGTCGAACCAGAAGAACCTTGGCAC 1369 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 ||||| |||| || |||||||| || ||||| |||||| |||| || || ||||| || Sbjct 1370 GATCAAATGCTCGAACCTGTGCACCGAGATTGTGGAGTACACCTCGCCCGAGGAGACCGC 1429 Query 97340 AGTTTGCGTTCTGGCATCGGTCAATCTGCC 97369 || ||| || || ||| || ||||| Sbjct 1430 CGTGTGCAACCTCGCCTCGATCGCGCTGCC 1459 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGA 98096 ||||| || || ||||||||||| || | | ||||||||| ||||| |||| | Sbjct 2149 TCTACCGCACCGTGTGGGAGATTCC-ACAGCGCAAGCTGATCGACATGGCCCGCGACCGC 2207 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCC-ACCTACAG 98155 || ||||| |||||| || ||||| || |||| | | || |||||| |||| | Sbjct 2208 GGCCAGTACATCGACCAGTCGCAGTCGTTGAACCTGTTCCT-GCAGAGCCCGACCTCGGG 2266 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || || ||||| | ||| ||| | ||| | ||||||||||||||| ||||||| Sbjct 2267 CCAGATCACGTCGATGCTCTTCTACACGTGGGAGTGCGGCCTCAAGACGGGCGTGTACTA 2326 Query 98216 TCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGACG 98262 ||| | || ||| |||| || | || || ||||| || |||| Sbjct 2327 CCTGCGCACGAAGGCGGCGGCCGACGCGATCAAGTTTACAGTAGACG 2373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741033253664760