Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq463 178 3e-39 >seq463 Length=3795 Score = 178 bits (196), Expect = 3e-39 Identities = 519/781 (66%), Gaps = 34/781 (4%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | || || |||||| || Sbjct 696 TTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCG 755 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||||||||| |||||| || || | || || || ||| | Sbjct 756 TGCTTCTTGGTCGCCTCGAAGGACGACAGCATCGACGGCATTTACGATACGCTGAAGGAG 815 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCG-T 363723 || || | || |||| || ||||| ||||| || | || | ||||| | || | Sbjct 816 TGCGCAGTCATCAGCAAGGCGGCCGGCGGCATTGGCCTGCA-CG-TGCACAACATCCGCT 873 Query 363724 GCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | | | ||| ||||| |||||| || |||||||||||||| || ||||| Sbjct 874 CCGCCGG-CAGCTACATCGCCGGCACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTA 932 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| | ||||| |||||||| || || |||||||| || || Sbjct 933 CGCGTCTTCAACAACACTGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCC 992 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || |||| || ||||| || ||||| || || | | |||||| || | ||| Sbjct 993 TTCGCCGTGTACCTTGAGCCGTGGCACGCCGACATCTTCG-GCTTCTTG--CTGCTGAAG 1049 Query 363904 ---AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 ||||| || || || || ||| || ||||| || || || || | ||| | | Sbjct 1050 CGCAACACCGGCAAGGACGACCAGCGCGCCCGTGACCTCTTTTACGCGTTGTGGATCCCA 1109 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTG---CCCA- 364014 |||| || |||||||| ||| || || | | || ||| || || || || | Sbjct 1110 GACCTGTTCATGAAGCGTGTGAAG--AGCGAGGGCAAGTGG--ACGCTGATGGATCCGAG 1165 Query 364015 CACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 ||| ||| || || || ||| | || || || | || || ||||| Sbjct 1166 CAC--ATGCCCGGGGCTGAGCGACTGCTACGGCGAGGAGTTTGAACGCCTGTACGAGCGC 1223 Query 364075 TATGAATCGGAGGGAAAGGCTCGTA----AGACAATTCCCGCACAGAAGCTATGGTTTGC 364130 || || || |||| | | || |||| || | || ||| || | ||||| || Sbjct 1224 TACGA----GAAGGAAGGCCGCGGCGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTCGC 1279 Query 364131 CATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAA 364190 ||| | || || ||||| ||||| || || | || | ||||| ||| ||||||| Sbjct 1280 GATCCTTGAGTCACAGATCGAGACGGGCGTGCCTTTCATCCTCTACAAGGATGCGTGCAA 1339 Query 364191 CCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGA 364249 | ||||||| |||||| || ||||||| || || || | | ||||| || ||||||| Sbjct 1340 CAGCAAGTCGAACCAGAAGAACCTTGGCACGAT-CAAATGCTCGAACCTGTGCACCGAGA 1398 Query 364250 TTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTC 364309 || | || |||||| | ||||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 1399 TTGTGGAGTACACCTCGCCCGAGGAGACCGCCGTGTGCAACCTCGCCTCGATCGCGCTGC 1458 Query 364310 C 364310 | Sbjct 1459 C 1459 Score = 107 bits (118), Expect = 5e-18 Identities = 283/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||||||| | ||||| |||||||| || || || | ||||||||||| || Sbjct 1893 CGCAACTCCCTCTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAAT 1952 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | || |||||| || | || || Sbjct 1953 AACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGTGGCGAG 2012 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT-TTCCGACCGCGGGCTGTGGGGTGA 364910 || ||||| || || |||||||| || | ||| || ||||| ||||| |||||| || Sbjct 2013 TTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATCCGA-CGCGGCCTGTGGAACGA 2071 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970 | ||| ||| | |||||| | || || || | | || ||| || | || Sbjct 2072 GACGATGCGCAACGAGATCATCTCATTCAACGGCTCCATCCTGACAATTGACGGCATCCC 2131 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || || || ||| | ||| ||||| ||||| ||| | ||| | || || || Sbjct 2132 CGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGCAAGCTGATCGA 2191 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||||| ||| ||||| | ||| ||| |||||||| ||| | ||| || | Sbjct 2192 CATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCGCAGTCGTTGAACCTGTTCCTG-C 2250 Query 365091 TCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 || || ||||| | | || | || || |||| |||||| |||| | | ||| || | Sbjct 2251 AGAGCCCGACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTGCGGCCTCA 2310 Query 365150 AGACAGG 365156 |||| || Sbjct 2311 AGACGGG 2317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303306825490382