Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq463 109 5e-19 >seq463 Length=3795 Score = 109 bits (120), Expect = 5e-19 Identities = 421/649 (65%), Gaps = 27/649 (4%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| ||||| |||| ||||| || ||| || ||||| | | ||| || | Sbjct 1410 TGTACTCCACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGT 1351 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 | || ||||||| ||||| ||||| | ||| | ||| |||||| |||| || | Sbjct 1350 TCGACTTGCTGTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTG 1291 Query 129857 TTTCGACAATGGTCCTGAACAAGTC-TC--GAGCCTTGATCTGTCTT-ACAAATTTGCCA 129912 || || | || |||| | | || | |||| |||| |||| || ||| Sbjct 1290 ACTC---AAGGATCGCGAACCACACCTCCTGCGCCTGGATC-GTCTGCACGCCGCGGCCT 1235 Query 129913 CATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCG---AGC 129969 |||||||| | | ||||| ||||||| || ||||| | |||| ||| Sbjct 1234 TCCTTCTCGTAGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTA---GCAGTCGCTCAGC 1178 Query 129970 AACGGCGATTCACGCGGACACATCAAACTCCACATTCCATC-CGCTTCGACTCGTTTCAT 130028 ||| || | |||| ||||| ||||| | || || | |||| || || ||||| Sbjct 1177 CCCGGGCATGTGCTCGGATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCAT 1119 Query 130029 AAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG----CGCTTTTCTATCCTCGG 130084 |||| || || | ||||| ||||| || | || || |||| || |||| | Sbjct 1118 GAACAGGTCTGGGATCCACAACGCGTAAAAGAGGTCACGGGCGCGCTGGTCG-TCCTTG- 1061 Query 130085 CACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACAT 130144 || |||| || ||||| | ||| || | ||||||||||||||||| |||| | Sbjct 1060 --CCGGTGTTGCGCTTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGT 1003 Query 130145 AAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGT 130201 | | || | |||||||| || || ||| || ||||| |||| ||| | | |||| Sbjct 1002 ACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGT 943 Query 130202 TGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAAC 130261 || |||| || | ||| | | ||| || || | ||||||||| |||| | ||| | | Sbjct 942 TGAAGACGCGTAGCATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGC 883 Query 130262 TGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCA 130321 |||| | || | ||| || ||| || || ||||||||| | || || | Sbjct 882 TGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGA 823 Query 130322 ACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 ||||| || ||||| || |||||||| |||| ||||| || || Sbjct 822 CTGCGCACTCCTTCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTT 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713671666565