Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2433 150 4e-31 seq1191 150 4e-31 seq2096 107 4e-18 >seq2433 Length=14949 Score = 150 bits (166), Expect = 4e-31 Identities = 498/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 296 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 355 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 356 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 415 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 416 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 475 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 476 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 535 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 536 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 594 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 595 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 652 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 653 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 712 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | | || | ||||| |||||||||| Sbjct 713 AGCCGCTCCTGGAAGCTCGCTCCGCTGCCA-ATCCACCGCACCGCCCACTCTGCCTTCTT 771 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 772 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 827 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 828 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 887 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 888 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 947 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 948 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 1007 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 1008 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 1041 Score = 150 bits (166), Expect = 4e-31 Identities = 498/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 3425 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 3484 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 3485 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 3544 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 3545 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 3604 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 3605 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 3664 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 3665 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 3723 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 3724 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 3781 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 3782 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 3841 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | | || | ||||| |||||||||| Sbjct 3842 AGCCGCTCCTGGAAGCTCGCTCCGCTGCCA-ATCCACCGCACCGCCCACTCTGCCTTCTT 3900 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 3901 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 3956 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 3957 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 4016 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 4017 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 4076 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 4077 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 4136 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 4137 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 4170 >seq1191 Length=39656 Score = 150 bits (166), Expect = 4e-31 Identities = 498/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 28371 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 28430 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 28431 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 28490 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 28491 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 28550 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 28551 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 28610 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 28611 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 28669 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 28670 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 28727 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 28728 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 28787 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | | || | ||||| |||||||||| Sbjct 28788 AGCCGCTCCTGGAAGCTCGCTCCGCTGCCA-ATCCACCGCACCGCCCACTCTGCCTTCTT 28846 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 28847 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 28902 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 28903 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 28962 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 28963 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 29022 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 29023 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 29082 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 29083 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 29116 >seq2096 Length=27730 Score = 107 bits (118), Expect = 4e-18 Identities = 214/315 (68%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTAT----GATGTGGAGCGTTCTAT 218573 |||||| | ||||||||||| ||||||||||| ||| ||| ||||| || Sbjct 8473 GACTTCGTGGACAAGGAGCTGATTCTTTTCTC----TATTGCGGATTGCGAGCGCAGCAT 8528 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||||||| | || ||||||||||| ||||| ||||||||||||||| ||||| Sbjct 8529 CCCCAGCGCAATTGACGGCCTCAAGCCCGGCCAGCGCAAGATCCTCTTTGCCTGCTTCAA 8588 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||||| || | | || ||||| | ||| | | || || || | ||| || Sbjct 8589 GCGCAACCTCGTCAACGCCATCAAGGTGGTGCAGCTAGCCGGCTACGTCGCGGAACACTC 8648 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||| || ||| | ||||| | || || |||||||| ||||| Sbjct 8649 CGCCTACCACCACGGCGACCAGTCGCTCGTGCAG---ACGATCGTGGGCATGGCGCAGGA 8705 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 || || ||| | |||||| | || ||| | |||| ||||| || | ||||| Sbjct 8706 CTTCGTCGGCGGCAACAACGTTCCTCTGTTGCGCAAAGACGGCCAGTTCGGCACACGTCT 8765 Query 218811 ATTGGGTGGAAAGGA 218825 ||| || ||||| Sbjct 8766 GCAGGGCGGCAAGGA 8780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027799913185641