Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2433 89.7 1e-12 seq1191 89.7 1e-12 >seq2433 Length=14949 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 669 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 612 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 611 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 553 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 552 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 493 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 492 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 433 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 432 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 373 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 372 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 313 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 312 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 258 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 3798 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 3741 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 3740 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 3682 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 3681 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 3622 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 3621 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 3562 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 3561 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 3502 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 3501 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 3442 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 3441 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 3387 >seq1191 Length=39656 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 28744 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 28687 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 28686 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 28628 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 28627 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 28568 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 28567 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 28508 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 28507 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 28448 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 28447 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 28388 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 28387 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 28333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102840420049350