Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq463 176 5e-39 seq2433 125 9e-24 seq1191 125 9e-24 >seq463 Length=3795 Score = 176 bits (194), Expect = 5e-39 Identities = 749/1168 (64%), Gaps = 23/1168 (2%) Strand=Plus/Minus Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 || |||||| || ||||| ||||| || ||| ||| || |||| || |||||||| Sbjct 1823 CTTCCACATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTA 1764 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219 |||||||| ||| ||||| || |||||| | || ||| || || ||||| Sbjct 1763 CGGGCCCTCCTCCTTCGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTC 1704 Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 114279 ||||| ||| |||| || ||||| | | || | || || ||| || Sbjct 1703 GAAAATCTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGAT 1644 Query 114280 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 114339 || ||||||| || || || || || | ||| | ||||| | | ||| || Sbjct 1643 GAAGGCATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCG 1584 Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || || |||||||| || || | || | ||||| || | || || || |||| Sbjct 1583 GCGCGCCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGAT 1524 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 ||| |||| | ||| | || ||| | ||| |||| || || || | Sbjct 1523 CTGCTTCGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAA 1464 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 ||| || ||||| || || || || ||||| | |||||| || |||||||| Sbjct 1463 GCGAGGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTC 1404 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 | ||| || || |||| || || | || || ||||| | |||||| || || ||||| Sbjct 1403 CACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTT 1344 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 |||| |||||||||||||| || ||| | ||| |||||||| | || |||| || Sbjct 1343 GCTGTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAG 1284 Query 114640 AATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698 || || ||| || | | ||| |||| | || | | || || |||| ||||| Sbjct 1283 GATCGCGAACCACACCTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCTTCCTTCTCGT 1225 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 | ||| ||| ||||||||| || || | || ||||| || || | Sbjct 1224 AGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTG 1166 Query 114759 CT-GGGCAGAAGAGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGG 114816 || || | || | ||| ||| || | ||| || |||||||||||||| |||||||| Sbjct 1165 CTCGGATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGG 1107 Query 114817 GATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGA 114874 |||||| | || | ||||| || || ||| ||| || || | || ||| | Sbjct 1106 GATCCACAACGCGTAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCGGTGTTGCGC 1049 Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 114934 || | ||| ||| | | ||| || ||||||||||| || |||||||| |||| | Sbjct 1048 TTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCG 989 Query 114935 CCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 ||||| || || || |||||| || || | || ||| || || ||||| ||| Sbjct 988 CCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGC 929 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTC 115049 || || | | |||| || ||| || || || ||| || | | || | Sbjct 928 ATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGC 871 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 || | || | ||||| ||||| || || ||| ||| ||| ||||||||| Sbjct 870 GGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCT 811 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC---AGC 115166 | || | |||| || |||||||| ||| |||| |||| | ||||| ||| Sbjct 810 TCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGC 751 Query 115167 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 115226 | ||| || ||| | || || || |||||||||||||| || || ||||| |||| | Sbjct 750 T---CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGA 694 Query 115227 TACCTTGGGACATCTTATCGTAGGTCTC 115254 || | |||||| ||||||||||| Sbjct 693 AGCCCTTCGACATCAAGTCGTAGGTCTC 666 >seq2433 Length=14949 Score = 125 bits (138), Expect = 9e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 569 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 628 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 629 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 688 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || ||| Sbjct 689 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCAAT 744 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 745 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 798 Score = 125 bits (138), Expect = 9e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 3698 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3757 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 3758 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3817 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || ||| Sbjct 3818 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCAAT 3873 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 3874 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 3927 >seq1191 Length=39656 Score = 125 bits (138), Expect = 9e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 28644 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 28703 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 28704 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 28763 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || ||| Sbjct 28764 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCAAT 28819 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 28820 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 28873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597332685157080