Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2641 116 4e-21 seq2203 116 4e-21 seq2647 113 5e-20 seq2270 113 5e-20 seq463 96.9 3e-15 >seq2641 Length=10753 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | |||||| || || || |||||||| || ||| Sbjct 8055 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 8114 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 8115 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 8174 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 8175 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 8234 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 8235 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8281 >seq2203 Length=74467 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | |||||| || || || |||||||| || ||| Sbjct 59 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 118 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 119 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 178 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 179 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 238 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 239 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 285 >seq2647 Length=59499 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | |||||| || || || |||||||| || ||| Sbjct 6437 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 6378 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| || | || || ||||||||||| || || Sbjct 6377 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 6318 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 6317 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 6258 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 6257 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 6211 >seq2270 Length=72018 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||||| || || || |||||||| || ||| Sbjct 71735 CCGCCGCGCAGGCGCAGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCG 71794 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 71795 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 71854 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 71855 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 71914 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 71915 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 71961 >seq463 Length=3795 Score = 96.9 bits (106), Expect = 3e-15 Identities = 427/665 (64%), Gaps = 17/665 (3%) Strand=Plus/Minus Query 154624 TGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 |||| | |||||| || | ||||| || |||| || ||||| ||||| ||||| | Sbjct 1410 TGTACTCCACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGT 1351 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 |||| ||| ||||||| || || ||||| | ||| | || |||||| || | || | Sbjct 1350 TCGACTTGCTGTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTG 1291 Query 154744 TTTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAAC--TTGACAAGTAAATCGATTT 154799 |||| || | |||| || || || |||||| | | || | || | Sbjct 1290 ACTCAAGGATCG--CGAACCACACCTCCTGCGCCTGGATCGTCTGCACGCCG--CGGCCT 1235 Query 154800 TCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCG 154859 || |||| || | |||||||| ||||||||| | ||| ||| || || Sbjct 1234 TCCTTCTCGTAGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCC 1175 Query 154860 GGACA-GCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAA 154918 || || | | |||| | ||||| | |||| | | | | || || ||||| || Sbjct 1174 GGGCATGTGCTCGGATC-CATCAGCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAA 1116 Query 154919 CAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCAT 154978 || || || | |||||| ||||| || | ||||| || | ||| || ||| | Sbjct 1115 CAGGTCTGGGATCCACAACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGT 1056 Query 154979 GTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGC 155038 ||| ||||| | ||| || | | |||||||||||||||||||| | || ||||| Sbjct 1055 GTTGCGCTTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGC 996 Query 155039 CATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACAC 155095 | ||||| ||||| || || || || ||||||| || || || ||| | || Sbjct 995 GAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGAC 936 Query 155096 GCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCG 155155 ||| | || || ||| || | | ||||||||| ||||| || ||||||| Sbjct 935 GCGTAGCATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGC 876 Query 155156 AGCACGCGCTTTATGAACATTAACGCCCAAACCTCC-GCCGTATT-TAGATATTTGCGCA 155213 | || || || || | | ||| | || || |||| || ||| |||||| Sbjct 875 GGAGCGGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCA 816 Query 155214 CAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA 155273 | ||| || || ||||| || || | ||||||||| || ||| | | | |||||| Sbjct 815 C--TCCTTCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAG 758 Query 155274 CACGA 155278 ||||| Sbjct 757 CACGA 753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499627306186440