Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq463 205 9e-48 >seq463 Length=3795 Score = 205 bits (226), Expect = 9e-48 Identities = 496/750 (66%), Gaps = 6/750 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||||||||| |||||||| || || ||| ||| |||||| ||||| ||| || Sbjct 705 GCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCTTG 764 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | |||| |||| |||| ||| |||| ||| | || ||||| || || | Sbjct 765 GTCGCCTCGAAGGACGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTC 824 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || || || | || ||| || | || || || | Sbjct 825 ATCAGCAAGGCGGCCGGCGGCATTGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGC 884 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| || || ||||| || || || || || || ||||| || ||||||||| Sbjct 885 TACATCGCCGGCACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAAC 944 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||||||||||||||| || || | | | ||||| | ||||| || || Sbjct 945 AACACTGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTAC 1004 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG---AACCACGGC 94248 || ||||| |||||||| ||| | | ||| | |||| ||| ||| |||| Sbjct 1005 CTTGAGCCGTGGCACGCCGACATCTTCGGCTTCTT---GCTGCTGAAGCGCAACACCGGC 1061 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || || | ||| | |||||||| ||||| | ||| | |||||||| || ||| Sbjct 1062 AAGGACGACCAGCGCGCCCGTGACCTCTTTTACGCGTTGTGGATCCCAGACCTGTTCATG 1121 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || ||| | | |||| || | ||| | ||| || || ||| Sbjct 1122 AAGCGTGTGAAGAGCGAGGGCAAGTGGACGCTGATGGATCCGAGCACATGCCCGGGGCTG 1181 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 |||| | || | |||||| | |||| | || ||||| | | ||| Sbjct 1182 AGCGACTGCTACGGCGAGGAGTTTGAACGCCTGTACGAGCGCTACGAGAAGGAAGGCCGC 1241 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | || || | || | || ||||| |||| | || |||| | ||| Sbjct 1242 GGCGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCACAGATCGAG 1301 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| ||| | |||| | | |||||| | |||| |||||| |||||| || || Sbjct 1302 ACGGGCGTGCCTTTCATCCTCTACAAGGATGCGTGCAACAGCAAGTCGAACCAGAAGAAC 1361 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||||| ||||||| ||||||||||||||||| ||||| || || || || Sbjct 1362 CTTGGCACGATCAAATGCTCGAACCTGTGCACCGAGATTGTGGAGTACACCTCGCCCGAG 1421 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 |||| || ||||| ||||| | ||| ||| Sbjct 1422 GAGACCGCCGTGTGCAACCTCGCCTCGATC 1451 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/284 (69%), Gaps = 15/284 (5%) Strand=Plus/Plus Query 95098 CTTG-TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTT 95156 |||| |||| || |||||||| || || ||| |||||||||| ||||| ||||||| || Sbjct 1904 CTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAATAACGAGTGCTT 1963 Query 95157 CGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCAT 95216 ||| ||||||||||| ||| | ||| | || || | || || ||||| || | Sbjct 1964 CGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGTGGCGAGTTCCCGGTGGT 2023 Query 95217 CAACAAGCACCTCCTACGGGACCTGA--CGTCTCTGGGTGTGTGGGGTGAC-AAGGTCAA 95273 |||||| ||||| | |||||| | || | | | |||| | ||| | | ||| Sbjct 2024 GAACAAGTACCTCGTGATGGACCTCATCCGACGCGGCCTGTGGAACGAGACGATGCGCAA 2083 Query 95274 -GA-ACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--CCCGCAAATACCGGAGG 95329 || | || || | |||||||||| ||| || || | || || || || | Sbjct 2084 CGAGATCATCTCAT-----TCAACGGCTCCATCCTGACAATTGACGGC--ATCCCCGACG 2136 Query 95330 ACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || |||||| ||||||| |||||||||||||| || |||||| Sbjct 2137 ACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGC 2180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494705878503960