Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2647 120 3e-22 seq2641 114 1e-20 seq2203 109 5e-19 seq2433 107 2e-18 seq1191 107 2e-18 seq2270 105 6e-18 >seq2647 Length=59499 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 6437 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 6378 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 6377 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 6318 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 6317 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 6258 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | | | ||| ||||||||||| || || || || |||||||||||| Sbjct 6257 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGCT 6207 >seq2641 Length=10753 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 8055 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 8114 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 8115 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 8174 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 8175 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 8234 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 8235 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 8282 >seq2203 Length=74467 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 59 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 118 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 119 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 178 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 179 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 238 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 239 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 286 >seq2433 Length=14949 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 713 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 655 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 654 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 595 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 594 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 535 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 534 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 476 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 475 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 416 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 415 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 359 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 358 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 299 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 298 CGAGAAGAAGGTGGGCGAGTAT 277 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 3842 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 3784 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 3783 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 3724 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 3723 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 3664 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 3663 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 3605 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 3604 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 3545 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 3544 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 3488 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 3487 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 3428 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 3427 CGAGAAGAAGGTGGGCGAGTAT 3406 >seq1191 Length=39656 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 28788 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 28730 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 28729 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 28670 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 28669 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 28610 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 28609 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 28551 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 28550 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 28491 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 28490 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 28434 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 28433 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 28374 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 28373 CGAGAAGAAGGTGGGCGAGTAT 28352 >seq2270 Length=72018 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || ||||| || || || ||||| || | Sbjct 71735 CCGCCGCGCAGGCGCAGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCG 71794 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 71795 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 71854 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 71855 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 71914 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 71915 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 71962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484151528240