Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq463 129 5e-25 >seq463 Length=3795 Score = 129 bits (142), Expect = 5e-25 Identities = 517/801 (65%), Gaps = 15/801 (2%) Strand=Plus/Plus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCG-AC-CGAAACTTA 122983 || ||||||| || | ||| | || | |||| | ||||| ||| || ||| || || Sbjct 616 TCCTGCGCGTTGCCCTCGGCATCCATGTCGACGACCT-GAAAA-GCGTACGCGAGACCTA 673 Query 122984 CGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCAC 123043 ||| |||||||| | || ||||||||||| | || || | ||| ||||||||| Sbjct 674 CGACTTGATGTCGAAGGGCTTCTTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCAC 733 Query 123044 GAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGG 123103 | | ||| ||| || ||||| || ||| || ||| | || ||||||||| ||| Sbjct 734 GCCGAAGCCGCAGATGAGCTCGTGCTTCTTGGTCGCCTCGAAGGACGACAGCATCGACGG 793 Query 123104 TATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGT 123163 || || || || || || ||||| | || ||| | ||||||||| ||| | Sbjct 794 CATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCGGCCGGCGGCATTGGCCT 853 Query 123164 GAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAA--TCGCC 123221 | |||||||| || | | | ||| ||| |||| |||| |||| | ||| Sbjct 854 GCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCCGGCACGAACGGCACGTCGAA 913 Query 123222 TCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGC 123281 | ||||| | | ||||| || || | ||| ||| | | || |||| ||||||||| Sbjct 914 T--GGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCCCGCTACGTGGACCAGGGC 971 Query 123282 GGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTAC 123338 ||| || ||||| ||||| | || | || || || |||||||||| || | | | Sbjct 972 GGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCCGACATCTTC 1031 Query 123339 GATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTG 123398 | || || | || ||||||| || ||| || || ||||| || | || Sbjct 1032 GGCTTCTTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGCGCCCGTGACCTCTTT 1091 Query 123399 TACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCG 123458 ||||| || ||| | || || |||| ||| || || || ||| ||| |||| || Sbjct 1092 TACGCGTTGTGGATCCCAGACCTGTTCATGAAGCGTGTGAAGAGCGAGGGCAAGTGGACG 1151 Query 123459 CTCATGTGTCCCGATC-GGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGA 123517 || ||| | |||| | || || || |||||||| |||||| | ||||||| Sbjct 1152 CTGATG-GATCCGAGCACATGCCCGGGGCTGAGCGACTGCTACGGCGAGGAGTTTGAACG 1210 Query 123518 GTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGT-TAGTCAGGTTCCGGCACGTGATT 123576 |||||| || |||||| |||||| || || | | | | ||| | || Sbjct 1211 CCTGTACGAGCGCTACGAGAAGGAAGGCCGCGGCGTGCAGAC-GATCCAGGCGCAGGAGG 1269 Query 123577 TGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAG 123636 ||| || | || |||| |||| || || ||| | ||| |||||||| | Sbjct 1270 TGTGGTTCGCGATCCTTGAGTCACAGATCGAGACGGGCGTGCCTTTCATCCTCTACAAGG 1329 Query 123637 ACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTT 123696 | || |||||||| || | || |||| ||| | || || || ||||| || || | Sbjct 1330 ATGCGTGCAACAGCAAGTCGAACCAGAAGAACCTTGGCACGATCAAATGCTCGAACCTGT 1389 Query 123697 GCTCCGAAATTATCGAATACA 123717 || |||| ||| | || |||| Sbjct 1390 GCACCGAGATTGTGGAGTACA 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987374237960