Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq463 199 5e-46 seq2433 113 6e-20 seq1191 113 6e-20 >seq463 Length=3795 Score = 199 bits (220), Expect = 5e-46 Identities = 857/1335 (64%), Gaps = 35/1335 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||| | ||||| |||||||| || || || | ||| || | || || Sbjct 1987 TAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGAC 1928 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| | ||| |||||| | || ||| | | | ||| Sbjct 1927 GCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCC 1868 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTCCCACATATCAAA 116075 || || ||||||||| || | ||| | || | || |||||| || || Sbjct 1867 TTCAGACTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTCGAA 1809 Query 116076 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 116135 ||| ||||| || ||| || || |||| || ||||| || |||||||| ||| Sbjct 1808 CTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTT 1749 Query 116136 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 ||||| || |||||| | || ||| || || ||||| ||||| ||| || Sbjct 1748 CGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTT 1689 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || || ||||| | | || | || || ||| || || ||||||| || Sbjct 1688 CACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAG 1629 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 || || || || | ||| | ||||| | | ||| || || || |||||||| Sbjct 1628 GCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGCCGTCTCCAC 1569 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || | || | ||||| || | || || || |||| ||| |||| Sbjct 1568 CGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACGCT 1509 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | ||| | || ||| | ||| |||| || || || | ||| || ||||| Sbjct 1508 GTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCGAT 1449 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || || || || ||||| | |||||| || |||||||| | ||| || || || Sbjct 1448 CGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCA 1389 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 || || || | || || ||||| | |||||| || || ||||| |||| |||||||| Sbjct 1388 CAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCATC 1329 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 ||||||||| || | ||| |||||||| | || |||| || || || ||| || Sbjct 1328 CTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGATCGCGAACCACAC 1269 Query 116616 AT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | | ||| |||| | || | | || || |||| |||||| ||| ||| Sbjct 1268 CTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCTTCCTTCTCGTAGCGCTCGTACAGGC 1210 Query 116675 CCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCT-GGACAGAAGA 116731 |||||||| || || ||| | || ||||| || || | || ||| | | Sbjct 1209 GTTCAAACTCCTCGCCGTAGCAGTCGCT--CAGCCCCGG-GCATGTGCTCGGATCCATCA 1153 Query 116732 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 | | ||| ||| || | ||| || || ||||||||||| |||||||||||||| | ||| Sbjct 1152 GCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAACGCG 1094 Query 116791 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | ||||| || || ||| ||| || || | || ||| | || | ||| | Sbjct 1093 TAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGA 1036 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 || | | ||| || ||||||||||| || |||||||| |||| | |||||||| || Sbjct 1035 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 976 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || || | || || ||| || ||||| ||||| || | | | Sbjct 975 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 916 Query 116966 CATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 ||| || ||| || || || ||| || | | | || | || | ||| | Sbjct 915 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGCAC 858 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 ||||| ||||| || || ||| ||| ||| |||||||||| | || | |||| Sbjct 857 GTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTA 798 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGTGG 117140 || || ||||| ||| |||| |||| | ||||| |||| ||| || || Sbjct 797 AATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGG 741 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 | | || || || |||||||||||||| || || ||||| |||| | || | ||||| Sbjct 740 CTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACAT 681 Query 117201 CTTATCGTAGGTCTC 117215 | ||||||||||| Sbjct 680 CAAGTCGTAGGTCTC 666 >seq2433 Length=14949 Score = 113 bits (124), Expect = 6e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 569 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 628 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 629 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 688 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || ||| | Sbjct 689 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATC 745 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 746 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 798 Score = 113 bits (124), Expect = 6e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 3698 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3757 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 3758 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3817 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || ||| | Sbjct 3818 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATC 3874 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 3875 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 3927 >seq1191 Length=39656 Score = 113 bits (124), Expect = 6e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 28644 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 28703 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 28704 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 28763 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || ||| | Sbjct 28764 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATC 28820 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 28821 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 28873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485719579160