Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2433 134 2e-26 seq1191 134 2e-26 >seq2433 Length=14949 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 286 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 345 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 346 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 405 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 406 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 464 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 465 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 524 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 525 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 584 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 585 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 644 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 645 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 703 Query 160061 AA 160062 || Sbjct 704 AA 705 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 3415 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 3474 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 3475 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 3534 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 3535 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 3593 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 3594 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 3653 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 3654 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 3713 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 3714 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 3773 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 3774 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 3832 Query 160061 AA 160062 || Sbjct 3833 AA 3834 >seq1191 Length=39656 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 28361 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 28420 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 28421 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 28480 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 28481 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 28539 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 28540 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 28599 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 28600 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 28659 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 28660 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 28719 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 28720 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 28778 Query 160061 AA 160062 || Sbjct 28779 AA 28780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795127359628560