Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2270 141 2e-28 seq2203 141 2e-28 seq2647 136 9e-27 seq2641 136 9e-27 >seq2270 Length=72018 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || ||||||||||| |||| ||||||||| || | || Sbjct 71741 CGCAGGCGCAGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 71800 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 71801 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 71860 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||||| | | || || |||| | Sbjct 71861 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGC 71920 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| || || || || ||||| || || || Sbjct 71921 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 71958 >seq2203 Length=74467 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || ||||||||||| |||| ||||||||| || | || Sbjct 65 CGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 124 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 125 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 184 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||||| | | || || |||| | Sbjct 185 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGC 244 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| || || || || ||||| || || || Sbjct 245 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 282 >seq2647 Length=59499 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || ||||||||||| |||| ||||||||| || | || Sbjct 6431 CGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 6372 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || |||||||||||||| || || Sbjct 6371 CGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 6312 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||||| | | || || |||| | Sbjct 6311 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGC 6252 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| || || || || ||||| || || || Sbjct 6251 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 6214 >seq2641 Length=10753 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| || | || Sbjct 8061 CGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 8120 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 8121 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 8180 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||||| | | || || |||| | Sbjct 8181 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGC 8240 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| || || || || ||||| || || || Sbjct 8241 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 8278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178879291082667