Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2641 172 6e-38 seq2270 172 6e-38 seq2203 167 3e-36 seq2647 163 3e-35 >seq2641 Length=10753 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 8067 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 8126 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 8127 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 8186 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 8187 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 8246 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || || ||||| ||||| Sbjct 8247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8281 >seq2270 Length=72018 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| ||| |||||| ||||| |||||||| | || ||||| | Sbjct 71747 CGCAGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 71806 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 71807 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 71866 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 71867 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 71926 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || || ||||| ||||| Sbjct 71927 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 71961 >seq2203 Length=74467 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 71 CGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 130 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 131 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 190 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 191 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 250 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || || ||||| ||||| Sbjct 251 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 285 >seq2647 Length=59499 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 6425 CGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 6366 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 6365 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 6306 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 6305 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 6246 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || || ||||| ||||| Sbjct 6245 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565218609590520