Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2433 334 8e-87 seq1191 334 8e-87 seq2641 140 3e-28 seq2647 136 4e-27 seq2203 136 4e-27 seq2270 131 2e-25 >seq2433 Length=14949 Score = 334 bits (370), Expect = 8e-87 Identities = 581/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || ||||| ||||||||||| ||||| || || || || || |||| Sbjct 259 CATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 318 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | |||||||||||| | | | Sbjct 319 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 377 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||| ||| | | ||| Sbjct 378 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 437 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 438 TCATG-CCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 495 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 496 CGCGTCTACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGTGT 554 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||||||||| | || || || ||||||| Sbjct 555 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 614 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 615 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 674 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | ||| Sbjct 675 CCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCTC 734 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 735 C---GCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 791 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 792 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 850 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || |||||||| ||| Sbjct 851 ACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACGCGCGC 910 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| | ||||||||| Sbjct 911 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGGTTCTCGATCACGATGCCG 970 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 971 TCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 1030 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 1031 TTCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 1080 Score = 334 bits (370), Expect = 8e-87 Identities = 581/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || ||||| ||||||||||| ||||| || || || || || |||| Sbjct 3388 CATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 3447 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | |||||||||||| | | | Sbjct 3448 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 3506 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||| ||| | | ||| Sbjct 3507 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 3566 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 3567 TCATG-CCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 3624 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 3625 CGCGTCTACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGTGT 3683 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||||||||| | || || || ||||||| Sbjct 3684 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 3743 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 3744 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 3803 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | ||| Sbjct 3804 CCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCTC 3863 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 3864 C---GCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 3920 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 3921 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 3979 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || |||||||| ||| Sbjct 3980 ACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACGCGCGC 4039 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| | ||||||||| Sbjct 4040 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGGTTCTCGATCACGATGCCG 4099 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 4100 TCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 4159 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 4160 TTCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 4209 >seq1191 Length=39656 Score = 334 bits (370), Expect = 8e-87 Identities = 581/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || ||||| ||||||||||| ||||| || || || || || |||| Sbjct 28334 CATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 28393 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | |||||||||||| | | | Sbjct 28394 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 28452 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||| ||| | | ||| Sbjct 28453 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 28512 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 28513 TCATG-CCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 28570 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 28571 CGCGTCTACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGTGT 28629 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||||||||| | || || || ||||||| Sbjct 28630 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 28689 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 28690 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 28749 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | ||| Sbjct 28750 CCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCTC 28809 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 28810 C---GCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 28866 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 28867 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 28925 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || |||||||| ||| Sbjct 28926 ACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACGCGCGC 28985 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| | ||||||||| Sbjct 28986 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGGTTCTCGATCACGATGCCG 29045 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 29046 TCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 29105 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 29106 TTCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 29155 >seq2641 Length=10753 Score = 140 bits (154), Expect = 3e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||||| | | Sbjct 8281 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 8222 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 8221 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 8164 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 8163 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 8104 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| |||||||||| || | |||||| Sbjct 8103 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 8054 >seq2647 Length=59499 Score = 136 bits (150), Expect = 4e-27 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||||| | | Sbjct 6211 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 6270 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 6271 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 6328 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 6329 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 6388 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| |||||||||| | |||||||| || | ||||||| Sbjct 6389 ACATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGCC 6439 >seq2203 Length=74467 Score = 136 bits (150), Expect = 4e-27 Identities = 175/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 |||| ||||| || ||||| || ||||| || ||||| || ||| | | || || ||| Sbjct 291 AAAATCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAG 232 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 || | ||||| | | |||| | || | || |||| ||||| ||||| || ||||| Sbjct 231 GCGAGCGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGC 174 Query 38357 CG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 || |||| ||||| || || | ||| ||||| |||||||| || | ||||| ||| | Sbjct 173 CGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGG 114 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| |||||||||| | |||||||| || | |||||| Sbjct 113 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 58 >seq2270 Length=72018 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||||| | | Sbjct 71961 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 71902 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 71901 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 71844 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 71843 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 71784 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||| ||||| | |||||||| || | |||||| Sbjct 71783 ACATCCAGAAGGAGTCGACACTGCACCTTGTGCTGCGCCTGCGCGGCGGC 71734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155287699840