Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq463 179 4e-40 seq2287 84.2 3e-11 seq1679 84.2 3e-11 seq913 84.2 3e-11 seq262 84.2 3e-11 seq212 84.2 3e-11 >seq463 Length=3795 Score = 179 bits (198), Expect = 4e-40 Identities = 1079/1707 (63%), Gaps = 49/1707 (3%) Strand=Plus/Minus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 |||||||| ||| || || |||| ||||| ||||| || || ||| | ||| | | Sbjct 2342 CGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAGAAGAG 2283 Query 109458 CATTGAAGAGAGTTTGGAAAGTG-TCGGACTCTCCATAAACAAGTTCATCGACTGAGACT 109516 ||| || | || | ||| | | |||| |||| || |||| ||||| |||||| |||| Sbjct 2282 CATCGACGTGA-TCTGGCCCGAGGTCGGGCTCTGCAGGAACAGGTTCAACGACTGCGACT 2224 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTT 109573 | |||||| | | || || || ||||||||||| | | | || | | ||| | Sbjct 2223 GGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGG---AATCT 2167 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| || || ||| | | ||||| || ||||| ||| | | || | | || | Sbjct 2166 CCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAGGATGG 2107 Query 109634 AGCCACCAGCCTTCACCATGAGAT-----CCTT---CATCTCTTTCGA-CCAGAGACCGA 109684 |||| || | ||||||| | || |||| | ||| ||| || ||| Sbjct 2106 AGCCG------TTGA--ATGAGATGATCTCGTTGCGCATCG-TCTCGTTCCACAGGCCGC 2056 Query 109685 CCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG-CAAGTGTG 109743 |||| || || || | |||||| ||||| || || ||| |||| Sbjct 2055 GTCGGATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACA- 1997 Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 || || | ||||||||| | ||| |||| ||||| ||||| || ||||| ||||| || Sbjct 1996 CGGCGTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGC 1937 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTT 109863 | || || || |||||||| || |||| | || ||| || | || | | | Sbjct 1936 GACGTCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATC 1877 Query 109864 ACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC--CC 109921 ||| ||| || |||||| || | || || || || | | || || Sbjct 1876 ACCTTCTCCTTCAGACTGTCCCAGTCCCAGCGGCCGCTG--TTCGGGCGGGGGTTCTTCC 1819 Query 109922 ACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACC 109981 |||| || || || | |||| || ||| |||||||| ||||||||| | Sbjct 1818 ACATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGC 1759 Query 109982 CCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAA 110041 |||| ||| |||| ||| || ||||| | || || || || ||||| |||| Sbjct 1758 CCTCCTCCTTCGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAA 1699 Query 110042 TATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAAC 110100 | | ||| |||| | | |||| ||| | ||||||| || | || |||| | || Sbjct 1698 TCTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGA-TGAAG 1640 Query 110101 ACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGA 110160 ||||||| || ||||| || || | || | ||||| | |||||| ||| || Sbjct 1639 GCATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGC 1580 Query 110161 GCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTC 110220 || || || || ||||| |||||||||||||||| || || || || || | | Sbjct 1579 GCCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGC 1520 Query 110221 TTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTG 110280 ||||||| | ||| | || ||| | | | |||||| || || | Sbjct 1519 TTCGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGA 1460 Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || || || || || || || |||||||| | ||||| || |||||| |||| | Sbjct 1459 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACA 1400 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || || || |||| ||| || | || || || | ||||||||| ||||| ||| | Sbjct 1399 ATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTG 1340 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| |||||||| ||||| ||| | || || || || ||||||||| || || Sbjct 1339 TTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGATC 1280 Query 110461 GCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 || ||| || | | ||| | || | ||| || | ||||||| |||||| Sbjct 1279 GCGAACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCTTCCTTCTCGTAGCG 1221 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT-TGTCGG 110578 ||||| | ||||| |||| ||||| || || ||| || | || | Sbjct 1220 CTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAG-CCCCGGGCATGTGCTCG 1162 Query 110579 GACAGAAGAGGGACCAATT-TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 || | || | ||| || || | ||| || || | ||||||||||||||| || ||| Sbjct 1161 GATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATC 1103 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 |||| ||| | || ||||||||| || || || | || |||| | ||| Sbjct 1102 CACAACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 1043 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 ||| ||| | | ||| || | |||||| || || || || || |||| || ||||| Sbjct 1042 AGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTG 983 Query 110758 CG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 || || || |||||| || ||||| || ||| |||||||| | ||||| || Sbjct 982 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGC 923 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC---ACGAATG 110871 | | |||| || || || || || | || | | ||| || ||| Sbjct 922 ACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGA---TGTAGCTGCCGGCGGAGCGGATG 866 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGT 110931 | ||| | |||| ||||| || || ||| ||| || || ||| ||||| | || Sbjct 865 TTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGC 806 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 ||| | ||||| || || || || |||| ||| | | ||||| || |||| Sbjct 805 GTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATC 746 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG 111051 || || ||||| || || |||||||| || || || || || |||| | || | Sbjct 745 TGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTC 686 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCG 111078 |||||| || ||| || ||| || || Sbjct 685 GACATCAAGTCGTAGGTCTCGCGTACG 659 >seq2287 Length=19018 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 392 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 333 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 332 CTGTTGGGAGCA-CTTTT 316 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 633 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 692 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 693 CTGTTGGGAGCA-CTTTT 709 >seq1679 Length=763 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 265 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 324 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 325 CTGTTGGGAGCA-CTTTT 341 >seq913 Length=43295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 30411 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 30470 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 30471 CTGTTGGGAGCA-CTTTT 30487 >seq262 Length=5167 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 1535 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 1594 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 1595 CTGTTGGGAGCA-CTTTT 1611 >seq212 Length=5627 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 5530 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 5471 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 5470 CTGTTGGGAGCA-CTTTT 5454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955378477800