Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq463 141 1e-28 seq2433 87.8 2e-12 seq1191 87.8 2e-12 seq2240 86.0 7e-12 seq2213 84.2 3e-11 seq2287 82.4 9e-11 seq2148 82.4 9e-11 >seq463 Length=3795 Score = 141 bits (156), Expect = 1e-28 Identities = 545/845 (64%), Gaps = 11/845 (1%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || || ||||| || |||||||| | | Sbjct 1459 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACA 1400 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| ||| || | || ||||| || | ||||| ||||| ||| || Sbjct 1399 ATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTG 1340 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 |||||||||||||||||||| ||| | ||| |||||||| ||||||||| || || Sbjct 1339 TTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGATC 1280 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || |||||| | | ||| |||| | || | | || || ||| |||||| Sbjct 1279 GCGAACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCTTCCTTCTCGTAGCG 1221 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT-TGTCTG 106754 ||| ||| |||||||||||| || |||| || || || || | || | Sbjct 1220 CTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCG 1162 Query 106755 GACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || | || | ||| ||| || | ||| || || ||||||||||| |||||||| ||| Sbjct 1161 GATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATC 1103 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 |||| | ||||||| || | || || || | || |||| | | | Sbjct 1102 CACAACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 1043 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 | ||| | | ||| || |||||||| |||||||| || || |||| | ||||| Sbjct 1042 AGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTG 983 Query 106934 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 || || || | || | || ||||| || ||| ||| || ||||| ||||| || Sbjct 982 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGC 923 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATC 107049 | | |||| || || || || || || || | || | | | Sbjct 922 ACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCGGATGTT 864 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || | ||||| ||||| || || ||| ||| ||| || |||||| | || || Sbjct 863 GTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGT 804 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | || || |||| ||| ||| ||||| ||||| | |||||| | |||||| Sbjct 803 ATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTG 744 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 107229 ||| | || || || || ||||||||||| || || ||||| |||| | || | || Sbjct 743 CGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGA 684 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 |||| |||||| ||||| || | | ||| || | |||||||||| ||| || Sbjct 683 CATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCGAGGGCAAC 624 Query 107290 ACGCA 107294 |||| Sbjct 623 GCGCA 619 >seq2433 Length=14949 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 569 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 628 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 629 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 688 Query 117394 CCCTCCAC 117401 |||||||| Sbjct 689 CCCTCCAC 696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 3698 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3757 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 3758 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3817 Query 117394 CCCTCCAC 117401 |||||||| Sbjct 3818 CCCTCCAC 3825 >seq1191 Length=39656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 28644 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 28703 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 28704 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 28763 Query 117394 CCCTCCAC 117401 |||||||| Sbjct 28764 CCCTCCAC 28771 >seq2240 Length=20529 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136163 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 136222 ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| Sbjct 8136 AGCTCCCATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAAT 8195 Query 136223 CCAGGTAGGAGC 136234 || ||| ||||| Sbjct 8196 CCTGGTGGGAGC 8207 >seq2213 Length=21410 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 136163 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 136222 ||||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | | Sbjct 7461 AGCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGT 7520 Query 136223 CCAGGTAGGAG 136233 ||||||||||| Sbjct 7521 CCAGGTAGGAG 7531 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136163 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 136222 ||||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | | Sbjct 13743 AGCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGT 13684 Query 136223 CCAGGTAGGAG 136233 ||||||||||| Sbjct 13683 CCAGGTAGGAG 13673 >seq2287 Length=19018 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 834 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 775 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 774 CAGGTAGGAG 765 >seq2148 Length=80209 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 69113 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 69172 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 69173 CAGGTAGGAG 69182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589960143297240