Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1046 138 9e-28 >seq1046 Length=41433 Score = 138 bits (152), Expect = 9e-28 Identities = 402/606 (66%), Gaps = 20/606 (3%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| |||||||| ||||| || ||||||||| ||||| || || ||||| Sbjct 4511 AGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTGC 4570 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 || | ||| |||||| || || || | | || |||| ||| || || || || Sbjct 4571 ACCAGCTCACCCGGTCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAATAC 4630 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||| |||||||| || || ||||| |||||||| | || | |||||| ||| ||| Sbjct 4631 GAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAGGAGCGCTGGTACAGCATGCAC 4690 Query 29971 GAGAGCTCTC-CGTC-----GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGA 30024 || |||||| ||| | ||||||| ||||| | | |||||| || || || Sbjct 4691 GACAGCTCTTTCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCAGG 4750 Query 30025 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 30084 ||||| || ||| | |||||||| ||| | || || || | ||| | |||| Sbjct 4751 GCCATCTGGTTCAACGCGCACGGGTTCCACGCGGTGAAGAGCATCCGGCGGTCGTTTGGG 4810 Query 30085 TTGTTCCTGATGAGGTCCACGG-CGTTTTGCAGCTGATCCACCCCCATCCCCGA-GTAGT 30142 || ||||| ||||| || ||| | ||||||||| || || ||| ||||| Sbjct 4811 TTCGCCCTGAGCGTCTCCACAATCGACTTG-ATCTGATCCACGCCT-TCTCCGTCGTAGT 4868 Query 30143 CTGCC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30201 ||| | || | || ||||| | || ||||| || | ||||||||| ||||| || || Sbjct 4869 TTGCGTCGCA-GCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGACGGGG 4927 Query 30202 CCCAGGTCTCCCTCTTCCCTGTGCTCG---AAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258 || ||||| | |||| ||| || || || | |||| | || | | || Sbjct 4928 CCGAGGTC---CATTTCCTTGTTTTCCGTCAAACCGCGGCTGTCGAGGAACGCGCGTGAG 4984 Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318 ||||| ||||||| || | | |||| || | ||| | | ||| || ||| Sbjct 4985 GCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCCCA 5044 Query 30319 CTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| ||||| || Sbjct 5045 CGCAAGAACCACAGCAGCTCCTCACAC-ACGCCACGCCAGAAGACACGCTTCGTCGTCAG 5103 Query 30378 GAGGGG 30383 ||||| Sbjct 5104 CAGGGG 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408603650944373