Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq2580 91.5 2e-13 >seq2580 Length=126694 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/259 (69%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 136687 TCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATT 136746 ||||| | ||||| ||||||| | || || || || ||||||||||| ||| || | Sbjct 73176 TCCACCAAGTCCTGCTGGGCCGCAATCACGGCATCAATGTCCTTGTACGCCGCGGGCGTC 73235 Query 136747 TCGTCGATCACGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGC--CTTGATCTGGT 136804 ||||| | ||| | ||||||||| ||||| | ||| ||||| ||| | |||| Sbjct 73236 TCGTCCAGCACACTGCTGTCCTTGCGACACTCAATCCCCGACGTGGCGGCTTCA--TGGT 73293 Query 136805 CCTCCAGGGTGAAG-GTCGCCTTGGCCTGGGTCCGCGAC---ATCGTCCGGCCCGCGCCG 136860 | | ||||||||| | || | | |||| || || | | ||| || || || ||| Sbjct 73294 CGGCGAGGGTGAAGCGGCGGCGT-GCCT--CACCACGGCTGTAGCGT-CGTCCGGCACCG 73349 Query 136861 TGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC 136920 || ||||| |||||| | | || | |||| ||||| ||||| |||||| || Sbjct 73350 TGAGAGCAGGAGCAGTAGCTGGCCTCGCTGCCTTTGCCACGCACAATGTAGCTGCGTGCA 73409 Query 136921 CCCATCGAGCCGGGGATGA 136939 |||||||| ||||| |||| Sbjct 73410 CCCATCGACCCGGGAATGA 73428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690119836333200