Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq2580 120 5e-22 >seq2580 Length=126694 Score = 120 bits (132), Expect = 5e-22 Identities = 269/398 (68%), Gaps = 17/398 (4%) Strand=Plus/Plus Query 168645 ACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGAACGCC---GGCACGAAC 168701 |||||||||||||| || || || || ||||| |||| |||||| | || | | || Sbjct 73590 ACGTAGTTGTGGTGGCAATTTACAGCGGCCTTGGTGGTCGTGAACGGCACTGGGATGCAC 73649 Query 168702 TCCCGGATCGCCTTGAGCACGCGGACCATCATCATGTCGCGGTTCAGGCGCGCGAAGTCT 168761 ||| | ||||| | |||| | ||| ||||| | |||||| | ||| ||| Sbjct 73650 GACCGCACCGCCTCTAACACGGCGTCCAGCATCAGCTGCCGGTTCCACCACGCAAAGCGC 73709 Query 168762 TGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCGCCCACTTCGAGCCAC 168821 || ||||| ||||||| |||||||||| ||| | | | ||| || || || Sbjct 73710 TGTGCCCACTCCACGGCAAAAATGTAGTCGTTGAAGTGCGTCGTGCCTTCTCGCAGGTAC 73769 Query 168822 GCGAGGTTCTCGTCCTGCGG---GCGCACATGGCGCTTTGCC-AGGGCGTTCTTCGCCTT 168877 || | || |||||| || | || || ||| |||| | | | || || ||| Sbjct 73770 GCTAAGTCCTCGTCAGGCAGATGGCTCAGTTGGG----TGCCGACGTCTTTTTTTGCCAG 73825 Query 168878 CTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGATCCCGAGTGCAGCATCAC 168937 |||||||||| |||||| |||||| || || || || ||||||||||||||||| Sbjct 73826 CTCGATGAAGACAGAGCCGATACGGTTGCCCACCCCACGTGACCCCGAGTGCAGCATCAC 73885 Query 168938 CCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGATGCAGATTTCGATGAAGTGGTT 168997 |||||| | || | | | | |||||| ||| | |||||| || ||||||||||| Sbjct 73886 CCACACATGCGAAGCGGGCTT---CTGATC-ATCT--AAGCAGATCTCAATGAAGTGGTT 73939 Query 168998 GCCGCCACCCAGCGACCCGAGTTGGGTCACGTTGTTCG 169035 ||| || || | ||||| ||| ||| | ||||| Sbjct 73940 GCCCGTGCCAAGAGTGCCGAGGTGGTTCAGATGGTTCG 73977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895735036978920