Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq2580 113 6e-20 >seq2580 Length=126694 Score = 113 bits (124), Expect = 6e-20 Identities = 274/413 (66%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 135780 ACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC---GGCAGGCCC 135836 ||||||||||||||||| || || || ||||| ||| |||||||| || | || | Sbjct 73590 ACGTAGTTGTGGTGGCAATTTACAGCGGCCTTGGTGGTCGTGAACGGCACTGGGATGCAC 73649 Query 135837 GACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAG 135896 ||| |||| ||||| | || | ||| ||||| || ||||| || ||| ||| Sbjct 73650 GAC---CGCACCGCCTCTAACACGGCGTCCAGCATCAGCTGCCGGTTCCACCACGCAAAG 73706 Query 135897 TCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGTTCGCCTTCGCAGAGC 135956 ||| |||| | ||||| | |||||||| ||| | || |||||| | || Sbjct 73707 CGCTGTGCCCACTCCACGGCAAAAATGTAGTCGTTGAAGTGCGTCGTGCCTTCTCGCAGG 73766 Query 135957 CAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCAGCATCATCTCCTTGGCC 136016 | || | ||||| ||| || | | || | || | | | || | | || ||| Sbjct 73767 TACGCTAAGTCCTCGTCAGGCAGATGGCTCA-GTTGGGTGCCGACGTCTTTT--TTTGCC 73823 Query 136017 TTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATC 136076 ||||||||||| | |||||| |||||| || || || || |||||||| |||||| Sbjct 73824 AGCTCGATGAAGACAGAGCCGATACGGTTGCCCACCCCACGTGACCCCGAGTGCAGCATC 73883 Query 136077 ACCCAGA---------CGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCG 136127 ||||| | || ||| | || || | ||||| ||| |||||||||||||| Sbjct 73884 ACCCACACATGCGAAGCGGGCTTCTGATCATCTAAGCAGATCTCAATGAAGTGGTTGCCC 73943 Query 136128 CCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTA 136180 ||| || ||||| || ||| || ||| | ||| | |||| | ||||| Sbjct 73944 GTGCCAAGAGTGCCGAGGTGGTTCAGATGGTTCGTGTTTTCCAGCACAGGGTA 73996 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/259 (69%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 135447 TCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATT 135506 ||||| | ||||| ||||||| | || || || || ||||||||||| ||| || | Sbjct 73176 TCCACCAAGTCCTGCTGGGCCGCAATCACGGCATCAATGTCCTTGTACGCCGCGGGCGTC 73235 Query 135507 TCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGC--CTTGATCTGGT 135564 ||||| | ||| | |||||| || ||||| | ||| ||||| ||| | |||| Sbjct 73236 TCGTCCAGCACACTGCTGTCCTTGCGACACTCAATCCCCGACGTGGCGGCTTCA--TGGT 73293 Query 135565 CCTCCAGGGTGAAG-GTCGCCTTGGCCTGGGTCCGCGAC---ATCGTCCGGCCCGCGCCG 135620 | | ||||||||| | || | | |||| || || | | ||| || || || ||| Sbjct 73294 CGGCGAGGGTGAAGCGGCGGCGT-GCCT--CACCACGGCTGTAGCGT-CGTCCGGCACCG 73349 Query 135621 TGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC 135680 || ||||| |||||| | | || | |||| ||||| ||||| |||||| || Sbjct 73350 TGAGAGCAGGAGCAGTAGCTGGCCTCGCTGCCTTTGCCACGCACAATGTAGCTGCGTGCA 73409 Query 135681 CCCATCGAGCCGGGGATGA 135699 |||||||| ||||| |||| Sbjct 73410 CCCATCGACCCGGGAATGA 73428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700420275676440