Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2433 170 4e-37 seq1191 170 4e-37 seq463 134 3e-26 >seq2433 Length=14949 Score = 170 bits (188), Expect = 4e-37 Identities = 535/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| |||||| | | |||| | ||| | | | | |||| Sbjct 1071 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGCTGAA--CGACGGGGAGC 1014 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| |||| | || || || |||| ||||| Sbjct 1013 GGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGA 954 Query 25640 ATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || |||| || | |||| || || ||| || |||||| | | |||| ||||| Sbjct 953 ACCT-TGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTT-TACGG 896 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 895 GTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTA 836 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | |||||| | || ||| || || || ||| Sbjct 835 CATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCA 777 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || ||| |||||| |||||| || |||||| |||| ||||| | || | Sbjct 776 TCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGGCAGCG-GAGCG--AGCTTCCAGG 720 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||||||| | | ||| || || |||||||||||||| ||| || ||||| ||| || Sbjct 719 AGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCT 661 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 660 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 601 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || ||||| |||||||| |||| ||| | Sbjct 600 TCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAG 541 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | | | ||| ||| || || |||||| ||| || ||| | |||||| Sbjct 540 CACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTAGACGCGGTGAACATCGAGCG 482 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGA 26173 ||||| | ||||||||| | || || ||| Sbjct 481 CGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGG 423 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || ||||| |||| ||||| |||| |||| ||| | |||||| || | | | | Sbjct 422 CGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATC-GCTGGGGCTGGAGAAGCAC 364 Query 26233 TACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| || |||| | ||||||||||| ||||| | || ||| || | || ||||| Sbjct 363 TACAACGTGACGC---AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 307 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||| ||||| ||||| Sbjct 306 AACTTCTTCGAGAAGAAGGTGGGCGAGTATCA 275 Score = 170 bits (188), Expect = 4e-37 Identities = 535/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| |||||| | | |||| | ||| | | | | |||| Sbjct 4200 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGCTGAA--CGACGGGGAGC 4143 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| |||| | || || || |||| ||||| Sbjct 4142 GGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGA 4083 Query 25640 ATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || |||| || | |||| || || ||| || |||||| | | |||| ||||| Sbjct 4082 ACCT-TGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTT-TACGG 4025 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 4024 GTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTA 3965 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | |||||| | || ||| || || || ||| Sbjct 3964 CATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCA 3906 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || ||| |||||| |||||| || |||||| |||| ||||| | || | Sbjct 3905 TCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGGCAGCG-GAGCG--AGCTTCCAGG 3849 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||||||| | | ||| || || |||||||||||||| ||| || ||||| ||| || Sbjct 3848 AGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCT 3790 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 3789 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 3730 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || ||||| |||||||| |||| ||| | Sbjct 3729 TCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAG 3670 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | | | ||| ||| || || |||||| ||| || ||| | |||||| Sbjct 3669 CACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTAGACGCGGTGAACATCGAGCG 3611 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGA 26173 ||||| | ||||||||| | || || ||| Sbjct 3610 CGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGG 3552 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || ||||| |||| ||||| |||| |||| ||| | |||||| || | | | | Sbjct 3551 CGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATC-GCTGGGGCTGGAGAAGCAC 3493 Query 26233 TACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| || |||| | ||||||||||| ||||| | || ||| || | || ||||| Sbjct 3492 TACAACGTGACGC---AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 3436 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||| ||||| ||||| Sbjct 3435 AACTTCTTCGAGAAGAAGGTGGGCGAGTATCA 3404 >seq1191 Length=39656 Score = 170 bits (188), Expect = 4e-37 Identities = 535/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| |||||| | | |||| | ||| | | | | |||| Sbjct 29146 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGCTGAA--CGACGGGGAGC 29089 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| |||| | || || || |||| ||||| Sbjct 29088 GGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGA 29029 Query 25640 ATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || |||| || | |||| || || ||| || |||||| | | |||| ||||| Sbjct 29028 ACCT-TGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTT-TACGG 28971 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 28970 GTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTA 28911 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | |||||| | || ||| || || || ||| Sbjct 28910 CATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCA 28852 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || ||| |||||| |||||| || |||||| |||| ||||| | || | Sbjct 28851 TCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGGCAGCG-GAGCG--AGCTTCCAGG 28795 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||||||| | | ||| || || |||||||||||||| ||| || ||||| ||| || Sbjct 28794 AGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCT 28736 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 28735 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 28676 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || ||||| |||||||| |||| ||| | Sbjct 28675 TCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAG 28616 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | | | ||| ||| || || |||||| ||| || ||| | |||||| Sbjct 28615 CACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTAGACGCGGTGAACATCGAGCG 28557 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGA 26173 ||||| | ||||||||| | || || ||| Sbjct 28556 CGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGG 28498 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || ||||| |||| ||||| |||| |||| ||| | |||||| || | | | | Sbjct 28497 CGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATC-GCTGGGGCTGGAGAAGCAC 28439 Query 26233 TACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| || |||| | ||||||||||| ||||| | || ||| || | || ||||| Sbjct 28438 TACAACGTGACGC---AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 28382 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||| ||||| ||||| Sbjct 28381 AACTTCTTCGAGAAGAAGGTGGGCGAGTATCA 28350 >seq463 Length=3795 Score = 134 bits (148), Expect = 3e-26 Identities = 516/798 (65%), Gaps = 33/798 (4%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| |||||||| ||| || ||| |||| | ||||| || || || Sbjct 1445 GGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCACAG 1386 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| ||| ||||| || || |||| || || || ||||||| ||| || ||||| Sbjct 1385 GTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCATCCTT 1326 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 |||||| || || || |||| ||||| | ||| | | | || ||| | ||| | || Sbjct 1325 GTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGATCGCGAACCACACCTC 1266 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCAC-CCTCGGTCTTT----TCATACCCG--GTAT 221945 ||| | || || | |||||| || ||| ||| || || | ||| Sbjct 1265 -CTG-----CGCCTGGATCGT--CTGCACGCCGCGGCCTTCCTTCTCGTAGCGCTCGTAC 1214 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 || || | ||||||| || ||||| ||| ||| || || || || ||| || Sbjct 1213 AG-GCGT-TCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCGGATCCA 1156 Query 222006 TCAGACTCCAGTGCTTGTTGTCT---TTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 |||| |||| |||| || || || | || |||||| ||||| |||||||||| Sbjct 1155 TCAGCGTCCA---CTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCCACA 1099 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 ||| | |||||| || | || ||||| || ||| |||| |||| | |||| || Sbjct 1098 ACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCA 1039 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 | || | || ||||| |||||||||||||| || || ||||| | ||||| |||| Sbjct 1038 AGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCT 979 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 | ||| ||||| |||| | | ||| | |||||||| ||| || |||| ||| Sbjct 978 TACCGCCGCCCTGGTCCA-CGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACC 920 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT---- 222297 || || || || ||||| ||||| ||||| ||| ||| | | ||| Sbjct 919 AGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGC 860 Query 222298 ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGT 222357 || |||| ||| || || ||||| || ||| | ||||| ||| || || Sbjct 859 ACGTGCAG----GCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGT 804 Query 222358 GTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 || ||||| || || ||| ||||| | | || || || || |||||| Sbjct 803 ATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTG 744 Query 222418 AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 | || | | | |||||| || || || || ||||||| || ||| ||||| | || Sbjct 743 CGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGA 684 Query 222478 CATCAGATCGTACGTCTC 222495 ||||| ||||| ||||| Sbjct 683 CATCAAGTCGTAGGTCTC 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928812278821440