Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2641 86.0 4e-12 seq2270 84.2 1e-11 seq2203 84.2 1e-11 >seq2641 Length=10753 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || | ||| ||||| | || || Sbjct 8072 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 8131 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 8132 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 8191 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | || | |||||||| | ||||| || | || |||||| | Sbjct 8192 GATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCT 8250 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||| || || ||||||||||| Sbjct 8251 TGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8281 >seq2270 Length=72018 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || | ||| ||||| | || |||| || || ||||| || Sbjct 71770 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAA 71829 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||| || |||| | || || ||||| || ||| |||| | | Sbjct 71830 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 71888 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||||| | ||||| || | || |||||| || || || | ||| || | Sbjct 71889 TCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCA 71948 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 71949 CGAAGATCTGCAT 71961 >seq2203 Length=74467 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || | ||| ||||| | || |||| || || ||||| || Sbjct 94 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAA 153 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||| || |||| | || || ||||| || ||| |||| | | Sbjct 154 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 212 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||||| | ||||| || | || |||||| || || || | ||| || | Sbjct 213 TCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCA 272 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 273 CGAAGATCTGCAT 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692778969920