Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq463 295 6e-75 seq2433 104 2e-17 seq1191 104 2e-17 >seq463 Length=3795 Score = 295 bits (326), Expect = 6e-75 Identities = 1156/1780 (65%), Gaps = 57/1780 (3%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 ||||| | || ||||||| || |||| |||||| |||||||| || ||||| || Sbjct 2347 GCCGCCGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAG 2288 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGG-CTCCGCCACGAAAAGATTAAACGATTG 146690 | | ||||| || || | | | ||||| ||| || | ||| || || ||||| || Sbjct 2287 AAGAGCATCGACGTGATCTGGCCCGAGGTCGGGCTCTGC-AGGAACAGGTTCAACGACTG 2229 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCA---TGCGTTTTGTCTT 146747 || || ||| | | ||||||| ||||| || |||| |||| | || | Sbjct 2228 CGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGGAAT 2169 Query 146748 CATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTG 146807 | ||||| |||| ||| ||| |||| | | || || || || ||||| | | Sbjct 2168 C---TCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAG 2112 Query 146808 AATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATT-TCGGGCGTGTAAAGGTTTAGTT 146866 || ||||| ||| | | || ||| || || || | | | ||| || Sbjct 2111 GATGGAGCCGTTGAATGAGATGATCTCGTTGCGCATCGTCTCGT-TCCACAGGCCGCGTC 2053 Query 146867 TAATGAGGTC-ATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGT 146925 |||||||| |||| | |||| || ||||| | |||||||| || ||||| Sbjct 2052 GGATGAGGTCCATCACG-AGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACACGG 1994 Query 146926 CTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCC 146985 | | || | || ||||| ||||| || |||| |||||||| | || || | | Sbjct 1993 CGTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGAC 1934 Query 146986 GTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGAT 147044 || | ||||| ||||| ||||| ||| | || || |||| ||| | ||| | Sbjct 1933 GTCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATC-AC 1875 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCA-CATCGAC-------GAGGGCGTCACGTTCCAC 147096 || ||||||| | | | ||||||||| | | | | ||| || |||||| Sbjct 1874 CTTCTCCTTCAGACTGTCCCAGTCCCAGCGGCCGCTGTTCGGGCGGGGGTTC--TTCCAC 1817 Query 147097 ATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCG 147156 |||||| |||| || | || | |||||||||||||| ||| || ||| || Sbjct 1816 ATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCC 1757 Query 147157 TCGCGCTGCGCCAATTCACAGCTT-GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGAT 147215 || || ||||| || || | ||||| | ||| | |||| ||||| ||| || Sbjct 1756 TCCTCCTTCGCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAAT 1698 Query 147216 TTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGC 147275 | ||| | ||| ||| | || || | |||| ||||| | | ||||| Sbjct 1697 CTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGC 1638 Query 147276 ATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCG 147334 ||| |||| ||||| | || | ||||| ||| || | || | ||||||||| || Sbjct 1637 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCAT-GTTGCTGCGGCGCG 1579 Query 147335 CGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTT 147394 | || | | || |||| |||||| || || | ||| ||||| || | | Sbjct 1578 CCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCT 1519 Query 147395 TAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT--ACGCATTG 147452 | || | | | ||| || | ||| | || || |||| | ||| ||| | | Sbjct 1518 TCGTGACGCTGTAGAGCAGCTGGTGATCC-ATCTCGCG-CTTCTCCTCGTTCACGAAGCG 1461 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC 147512 || ||||| || || || ||||| ||||| ||||| |||| | |||||| ||| Sbjct 1460 AGGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCAC 1401 Query 147513 GATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCG 147572 || |||| ||||||||| |||||| || || | || | ||| || || | Sbjct 1400 AATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCT 1341 Query 147573 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 |||||||| || ||| |||| ||| | || |||| ||||||| || | |||| ||| Sbjct 1340 GTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGAT 1281 Query 147633 A---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTA 147689 |||| || |||||||| | | | |||| |||||| || || ||||| Sbjct 1280 CGCGAACCA---CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCTTCCTTCTCGTA 1224 Query 147690 CCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGAT 147748 |||||||||| || |||||||| ||||||||||| ||| || || || || || | Sbjct 1223 GCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCT 1164 Query 147749 GCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCA 147808 |||| |||||||| |||| || | || || || || ||| ||||| || || | Sbjct 1163 -CGGATCCATCAGCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGA 1105 Query 147809 CCCACAGCGCGTACATAAGATCGCG--CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTT 147866 ||||| |||||| | || || || ||| || || || ||| ||||||| || Sbjct 1104 TCCACAACGCGTAAAAGAGGTCACGGGCGCGCTGG--TCGTCCTTGCCGGTGTTGCGCTT 1047 Query 147867 CAA-ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCAC 147925 || | ||| | | | |||||||||||||||| || |||| ||| ||||| | || | Sbjct 1046 CAGCAGCAAGAAGCCGA-AGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGC 988 Query 147926 CTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCA 147982 | || ||||| ||||| |||||| || | ||| | ||||||| || ||||| | || Sbjct 987 CCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCA 928 Query 147983 TGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCA 148042 | || |||| || ||| |||||||| ||| ||| | ||||||| || || | Sbjct 927 TCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGA 868 Query 148043 CTTCGTGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT-ATGGCAGCGCAATCGCC 148100 | |||||||| | ||||||||||||| ||| | ||| | ||| | ||||| || Sbjct 867 TGTTGTGCACGTGCAGGCCAATGCCGCCGGCCG--CCTTGCTGATGACTGCGCACTCCTT 810 Query 148101 CAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACA 148160 || || ||| ||||||||||||||||||| || | | | ||| || ||||| | Sbjct 809 CAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT 750 Query 148161 CATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--T 148218 ||| ||||| || |||| || || ||| ||||| || | |||||||| || || Sbjct 749 CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCC 690 Query 148219 TTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCC 148278 || || ||||| | || ||||| || || | ||||||| | || ||||| Sbjct 689 CTTCGA--CATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCG 632 Query 148279 AGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA 148318 || || ||||||| || | ||||| || || ||| ||| Sbjct 631 AGGGCAACGCGCAGGAAAAGCTGCTGCGGACGCTCGACAA 592 >seq2433 Length=14949 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 633 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 574 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 573 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 515 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 514 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 457 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 456 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 399 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 398 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 339 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 338 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 279 Query 47269 ATAAG 47273 || || Sbjct 278 ATCAG 274 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 3762 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 3703 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 3702 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 3644 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 3643 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 3586 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 3585 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 3528 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 3527 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 3468 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 3467 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 3408 Query 47269 ATAAG 47273 || || Sbjct 3407 ATCAG 3403 >seq1191 Length=39656 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 28708 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 28649 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 28648 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 28590 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 28589 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 28532 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 28531 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 28474 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 28473 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 28414 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 28413 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 28354 Query 47269 ATAAG 47273 || || Sbjct 28353 ATCAG 28349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594512650360