Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1046 178 2e-39 >seq1046 Length=41433 Score = 178 bits (196), Expect = 2e-39 Identities = 399/594 (67%), Gaps = 14/594 (2%) Strand=Plus/Plus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 ||||| | |||||| || || ||||||||| ||||| || || |||||||| | || Sbjct 4520 TTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCA 4579 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 ||||| || || ||| | | || | || || |||||||| || ||| ||| Sbjct 4580 CCCGGTCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATG 4639 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC 147096 || || || || || ||||||||||| | || | |||||||||| |||||| ||||| Sbjct 4640 TTAAACGGCACGCCGAGGCCCATGTCGCAGGAGCGCTGGTACAGCATGCACGACAGCTCT 4699 Query 147097 C-CGTCGGC-----CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCG 147150 ||| | |||||| ||||||| || | |||||| |||||||| ||||| | Sbjct 4700 TTCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGG 4759 Query 147151 GGCAGGTCCGCG---GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTC 147207 || |||| |||||||| || | || | || ||| | | | |||||| | Sbjct 4760 TTCAA---CGCGCACGGGTTCCACGCGGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCC 4816 Query 147208 TTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCG 147267 | | | || | || | || | | ||| |||||||| | || ||||||||| || Sbjct 4817 CTGAGCGTCTCCACAATCGACTTGATCTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCG 4876 Query 147268 CAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCG 147327 ||| || |||| ||| || ||||| | ||||||||||||||| || || || ||||| Sbjct 4877 CAGCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGACGGGGCCGAGGTCC 4936 Query 147328 CCGGGCTTTCTGTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTC 147386 ||| | | || || || || | | | ||| ||| || | || ||| | |||| Sbjct 4937 ATTTCCTTGTTTTCCGTCAAACCGCGGCTG-TCGAGGAACGCGCGTGAGGCGTTGCCGTC 4995 Query 147387 CCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCA 147446 ||| || | ||||| | | ||| || | || ||| || || | |||||| Sbjct 4996 CCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCA 5055 Query 147447 GAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 ||||||||||| | || || | ||| ||||| | ||| || ||||||||||| Sbjct 5056 CAGCAGCTCCTCACACACGCCACGCCAGAAGACACGCTTCGTCGTCAGCAGGGG 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583467570626400