Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq463 89.7 2e-12 seq2433 87.8 6e-12 seq1191 87.8 6e-12 >seq463 Length=3795 Score = 89.7 bits (98), Expect = 2e-12 Identities = 212/315 (67%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 254834 GAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCG 254893 || ||||| ||| | ||||| | ||| ||||| | |||||| || | || | || Sbjct 777 GACGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCG 836 Query 254894 AGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG 254953 ||||||| | || || || | |||| | ||| || ||||| || ||| | Sbjct 837 GCCGGCGGCATTGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACAT-CGCCGG 895 Query 254954 -ACGAACGG-ACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTC 255011 |||||||| ||| | ||| | | || ||| | || || ||||||||| || | Sbjct 896 CACGAACGGCACGTCGAATGGGC-TGGTGCCGATGCTACGCGTCTTCAACAACACTGCCC 954 Query 255012 GCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGT 255071 ||||||| || || || ||||| || ||| || || ||| || | ||||| ||||||| Sbjct 955 GCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGT 1014 Query 255072 GGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGA 255131 ||||||||||||| | || || |||||| ||| ||||||| || || | | Sbjct 1015 GGCACGCCGACATCTTCGGCTTCTTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC 1074 Query 255132 TCGCCCGCGACATCT 255146 |||||| ||| ||| Sbjct 1075 GCGCCCGTGACCTCT 1089 >seq2433 Length=14949 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 657 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 598 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 597 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 538 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 537 AAGCTGCC 530 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 3786 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 3727 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 3726 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 3667 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 3666 AAGCTGCC 3659 >seq1191 Length=39656 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 28732 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 28673 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 28672 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 28613 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 28612 AAGCTGCC 28605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588278998095445