Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq463 131 2e-25 seq2433 87.8 2e-12 seq1191 87.8 2e-12 seq2240 86.0 8e-12 seq2213 84.2 3e-11 seq2287 82.4 1e-10 seq2148 82.4 1e-10 >seq463 Length=3795 Score = 131 bits (144), Expect = 2e-25 Identities = 873/1387 (63%), Gaps = 35/1387 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||| | || || ||||| || ||||| || | ||| || | || || Sbjct 1988 GTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGA 1929 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| ||| || ||| || | || || | | | || Sbjct 1928 CGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTC 1869 Query 110827 CTTGAGAACATCCCAGTCGTAG----------TTGAGCTTGGTTTCACCTTCCCACATGT 110876 ||| ||| |||||||| || | | || || ||| | |||||||| Sbjct 1868 CTTCAGACTGTCCCAGTCCCAGCGGCCGCTGTTCGGGCGGGGGTTC----TTCCACATGT 1813 Query 110877 CAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA-GGAACCTTGG 110935 | ||||| || | ||| ||| |||||| |||| ||||| || || || ||| Sbjct 1812 CGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCT 1753 Query 110936 GCTTCAGCCAATTCACAGCT-CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG 110994 |||| |||| || || | |||||||| | ||| || ||||| || || || Sbjct 1752 CCTTC-GCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTC 1695 Query 110995 AGCATTCATCTCCTTGGCTTCATC--TGAATCAAATGCGTAGCGGCA-CAAAATAAATAC 111051 ||| |||| | || || || | ||| | || | | || ||| ||| || || | Sbjct 1694 AGCGTTCACCCTCTGCGCCTCTGCACTGA--CGAAGG-GCAGGCGCAGCAAGATGAAGGC 1638 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 |||||| || || || || ||||| || | ||| | || ||||| || ||||| Sbjct 1637 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGC 1578 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 ||||| || || || | || | ||| ||||| ||||| || || || | ||| Sbjct 1577 CGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTT 1518 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231 |||| | || | | ||| | ||| |||| || || || | || Sbjct 1517 CGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGG 1458 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || ||||| || || | ||||| || || ||||| || |||||||| | ||| Sbjct 1457 CAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAAT 1398 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | ||| || | || ||||| || | ||||| ||||| ||| |||| Sbjct 1397 CTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTT 1338 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 |||||||||||||||||| ||| | ||| |||||||| ||||||| | || || || Sbjct 1337 GCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGATCGC 1278 Query 111412 CTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 ||| || | | ||| |||| | || | | || || ||| |||||| Sbjct 1277 GAACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCTTCCTTCTCGTAGCGCT 1219 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT-TGTCTGGA 111529 ||| ||| |||||||||||| || |||| || || || || | || ||| Sbjct 1218 CGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCGGA 1160 Query 111530 CAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | || | ||| ||| || | || || || ||||||||||| |||||||| ||||| Sbjct 1159 TCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCA 1101 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 || | ||||||| || | || || || | || |||| | | | Sbjct 1100 CAACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAG 1041 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 | ||| | | ||| || |||||||| |||||||| || || |||| | ||||| || Sbjct 1040 CAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCG 981 Query 111709 ---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 980 CTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCAC 921 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCAT 111824 | |||| || || || || || || || | || | | | | Sbjct 920 CAGCCCATTCGACGTGCCGTTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCGGATGTTGT 862 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | | ||||| ||||| || || ||| ||| ||| || |||||| | || || Sbjct 861 GCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTAT 802 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | || || |||| ||| ||| ||||| ||||| | |||||| | |||||||| Sbjct 801 CGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGCG 742 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACA 112004 | | || || || || ||||||||||| || || ||||| |||| | || | |||| Sbjct 741 GCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACA 682 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 || |||||| ||||| || | | ||| || | |||||||||| || || | Sbjct 681 TCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCGAGGGCAACGC 622 Query 112065 GCATGAA 112071 ||| ||| Sbjct 621 GCAGGAA 615 >seq2433 Length=14949 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 569 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 628 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 629 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 688 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 689 CCCTCCAC 696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 3698 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3757 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 3758 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3817 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 3818 CCCTCCAC 3825 >seq1191 Length=39656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 28644 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 28703 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 28704 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 28763 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 28764 CCCTCCAC 28771 >seq2240 Length=20529 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145281 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 145340 ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| Sbjct 8136 AGCTCCCATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAAT 8195 Query 145341 CCAGGTAGGAGC 145352 || ||| ||||| Sbjct 8196 CCTGGTGGGAGC 8207 >seq2213 Length=21410 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 145281 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 145340 ||||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | | Sbjct 7461 AGCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGT 7520 Query 145341 CCAGGTAGGAG 145351 ||||||||||| Sbjct 7521 CCAGGTAGGAG 7531 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 145281 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 145340 ||||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | | Sbjct 13743 AGCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGT 13684 Query 145341 CCAGGTAGGAG 145351 ||||||||||| Sbjct 13683 CCAGGTAGGAG 13673 >seq2287 Length=19018 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 834 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 775 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 774 CAGGTAGGAG 765 >seq2148 Length=80209 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 69113 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 69172 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 69173 CAGGTAGGAG 69182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628010011029600